Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0714
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    29   2.3  
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    29   2.3  
At2g12875.1 68415.m01402 hypothetical protein                          29   3.0  
At5g13590.1 68418.m01572 expressed protein                             27   7.0  
At3g17190.1 68416.m02193 hypothetical protein                          27   7.0  
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa...    27   9.3  

>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -1

Query: 510 LNMSLHSRGYICRILFGVHMDDFDVSQR-STFSYFGHGIEKRHRRGGRALGEHGQS-GFK 337
           L ++L S G   R LF + + D   ++R    S+FG  +E     G   L   G   G+K
Sbjct: 86  LFIALASEGADVRALFELTLVDQSGNERHKVHSHFGRTLES----GPYTLKYRGSMWGYK 141

Query: 336 TFLKRLLCGRIFRLPVQGLRQRLCIRKVTS 247
            F KR L      L   GL  R C+  V S
Sbjct: 142 RFFKRSLLESSDYLKDNGLLVRCCVGVVKS 171


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = -1

Query: 510 LNMSLHSRGYICRILFGVHMDDFDVSQR-STFSYFGHGIEKRHRRGGRALGEHGQS-GFK 337
           L ++L S G   R LF + + D   ++R    S+FG  +E     G   L   G   G+K
Sbjct: 86  LFIALASEGADVRALFELTLVDQSGNERHKVHSHFGRTLES----GPYTLKYRGSMWGYK 141

Query: 336 TFLKRLLCGRIFRLPVQGLRQRLCIRKVTS 247
            F KR L      L   GL  R C+  V S
Sbjct: 142 RFFKRSLLESSDYLKDNGLLVRCCVGVVKS 171


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 307 STAKEAFEKCLKSGLTVFAQCAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTE 465
           ST  + F +C   G ++   CA     P        G   S  DI++  M+TE
Sbjct: 267 STVGKLFTRCYLLGYSLSGSCATPRNTPRARKGNTSGFRASAEDIRLHRMYTE 319


>At5g13590.1 68418.m01572 expressed protein 
          Length = 1190

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 390  SSQCHDRSRKKWIVARHQSRPYAHRKGCGICNPGNARTYS 509
            SS  H    ++ +V RH S P++HR      N G  R Y+
Sbjct: 995  SSPDHSGYSREMVVRRHNSPPFSHRPS----NAGRGRGYA 1030


>At3g17190.1 68416.m02193 hypothetical protein
          Length = 112

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 438 VSQRSTFSYFGHGIEKRHRRGGRALGEHGQSGFKTFLKR 322
           +SQ     + G GI++R  +G R LGE    G    + R
Sbjct: 19  LSQDPKEGHIGRGIQQRDEKGKRKLGEINNLGASVLMMR 57


>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 444 SRPYAHRKGCGICNPGNARTYSDRYRC 524
           S+   H  GCGIC  G    +   Y+C
Sbjct: 150 SKKQYHCDGCGICRIGGRENFFHCYKC 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,681,106
Number of Sequences: 28952
Number of extensions: 257279
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)