Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0711
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    29   1.3  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 339 LRFLCGFI*VLAFLLPVYSHYYINFKTLLLHCVEYNNIYIT 217
           L  +  F+ + A  +P+   +Y N++   +    YN+IY T
Sbjct: 62  LAMMMYFVIIAARAIPIIREFYFNYQDYYIAAAAYNHIYYT 102


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 330 LCGFI*VLAFLLPVYSHYYINFKT 259
           +C F  +++F++ + S +YIN+KT
Sbjct: 62  ICDFSQMISFVVVMTSQFYINYKT 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,043,189
Number of Sequences: 27780
Number of extensions: 154674
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)