Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0711
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   2.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   3.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.8  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 133 RLFTFVMVLWIFFCHMNNII*YYRILVSLINTK 35
           RL+    +   F   M NII YY +L +  +TK
Sbjct: 269 RLYELTKIDKWFLHKMKNIIDYYLVLENTDHTK 301


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 137 FIKYEHNHTKK 169
           +IKY H H KK
Sbjct: 67  YIKYSHTHEKK 77


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = -2

Query: 294 PVYSH--YYINFKTLLLHCVEYNNI 226
           P+ SH  YY+N +  +    E NNI
Sbjct: 270 PLTSHSLYYVNMEPFMKSQYEENNI 294


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 409 KKDSAQCNAT*ISRRAGSTTRCMPPFPLRVHLSIS 305
           ++  ++C+ T +    G T   + P P   HL +S
Sbjct: 359 ERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVS 393


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 12  KTIYFKNYLVFIK 50
           K +Y+KNY++ I+
Sbjct: 102 KKLYYKNYIINIE 114


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 12  KTIYFKNYLVFIK 50
           K +Y+KNY++ I+
Sbjct: 113 KKLYYKNYIINIE 125


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 12  KTIYFKNYLVFIK 50
           K +Y+KNY++ I+
Sbjct: 343 KKLYYKNYIINIE 355


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 12  KTIYFKNYLVFIK 50
           K +Y+KNY++ I+
Sbjct: 338 KKLYYKNYIINIE 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,316
Number of Sequences: 438
Number of extensions: 1704
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)