Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0711
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12950.1 68418.m01485 expressed protein putative secreted pro...    27   4.8  
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    27   8.5  
At1g08845.1 68414.m00986 expressed protein                             27   8.5  

>At5g12950.1 68418.m01485 expressed protein putative secreted
           protein SCF41.30c, Streptomyces coelicolor,
           EMBL:SCF41_30
          Length = 861

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 383 NLNQPTRGVNDTVYASVSFAGSFKY 309
           +LN+ T G+ND +Y   S  G  KY
Sbjct: 286 SLNEETGGMNDVLYQLYSITGDSKY 310


>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 420 CFIKKKIAHNAMQLKSADARGQRHGVCLRFLCG 322
           C+I KK  H A         G +  VCLR  CG
Sbjct: 210 CYICKKTGHRAKDCPDKYKNGSKGAVCLR--CG 240


>At1g08845.1 68414.m00986 expressed protein 
          Length = 189

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 313 LNEPAKETEAYTVSLTPR 366
           L+E AKE + YT S TPR
Sbjct: 144 LSERAKEADVYTASYTPR 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,152,834
Number of Sequences: 28952
Number of extensions: 131018
Number of successful extensions: 199
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)