Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0709
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    28   1.2  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   2.8  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    23   4.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.5  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    25   6.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   6.5  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    25   8.6  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   8.6  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   8.6  

>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 187 CFELIVVADNFGVATYAIFLFALTIW 264
           CF       NF + TYA+F F+L +W
Sbjct: 103 CFVDSFFPSNFFLRTYALFTFSLQLW 128


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 432 GDFEGPIQLNVLKDQQTSSQLSPSLEKGLANITFAFDDVLDMRVR 298
           G+   P Q+N     Q S  +  SL+  LAN +  F D+L++R +
Sbjct: 108 GNRNKPAQMN-----QHSENVVVSLQNSLANTSMTFKDILEIRTQ 147


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = -2

Query: 509 STIAP*ITGTCRSALHSSKALSLWVSEISRAQYN*TYLKTNKPPVNSAQVLRRALRISPL 330
           S   P ++ +   +LH     ++WV+E+        YL  +  PV S+ +   A   +  
Sbjct: 447 SLAVPTVSSSTTGSLHYKTTTTVWVTEVFT-----RYLGDDSTPVTSSSIFSTATEATDT 501

Query: 329 PSMTSS 312
              TSS
Sbjct: 502 SVQTSS 507


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 23.0 bits (47), Expect(2) = 4.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 274 NWGDATACPYTHIE 315
           NW D   CP THIE
Sbjct: 94  NW-DGLECPITHIE 106



 Score = 21.0 bits (42), Expect(2) = 4.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 349 ALLKTWAELTGGLLVFKYVQLYWALEISETH 441
           +L++ WA L   LL      L W   I++ H
Sbjct: 138 SLIRAWAPLKPILLAPAMNTLMWTNPITQEH 168


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 421  LEISETHKDKAFEECRADLQVPVIYG 498
            L+I E+H D  ++ C  D  +PV  G
Sbjct: 2246 LQIFESHPDNYYQVCFVDYHMPVYDG 2271


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 283 RPSSQTTISLGRTRKSRTWPHRNYLQPQSTRSNTHI 176
           RP+  T +  G+    +  PHR Y+ P    S + +
Sbjct: 189 RPTPMTNLDDGKDEIGQPDPHRKYMAPPRVNSISRV 224


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = +1

Query: 316 DVIEGKGDIRKA-LLKTWAELTGGLLVFKYVQLYWAL-----EISETHKDKAFEECRADL 477
           D + G  D  K  + + +  L  G+ + KY++LY A+     + S+T     F +  A++
Sbjct: 18  DSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHNYCADASKTITVDNFNDQTANV 77

Query: 478 QVPVIYGAIVEGIATCLCRLVSKSLGDLN 564
               +Y  +V  +   L RL  + +   N
Sbjct: 78  LGEALYNNLVLYLEEYLARLRKECISQTN 106


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 474 ISPALLKGFVF-MGLGDFEGPIQLNVLKDQQTSSQLSPSL 358
           ISP  L   V      +F G  Q+NV+    + SQ  PSL
Sbjct: 389 ISPTALSNSVLNYDSNNFSGTPQINVVPSSPSKSQSGPSL 428


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 496 GAIVEGIATCLCRLVSKSLGDLNPRFATDIDAFIG 600
           GA++  I T +  L+     DL P F  ++ A IG
Sbjct: 327 GAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIG 361


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 4   IRHEEDQQSHVRSGWSY-RRFSSF 72
           IR E  +  HVRSGW   RR+  F
Sbjct: 722 IRIERLENGHVRSGWMVARRYREF 745


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 55  RRFSSFWTSLLAHCARRLVHKTIN 126
           RRFSS W    +  +++ ++K IN
Sbjct: 520 RRFSSLWKQATSQSSQQWIYKLIN 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,561
Number of Sequences: 5004
Number of extensions: 50617
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)