Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0709
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040           29   2.2  
10_08_0416 + 17770384-17770992                                         28   5.0  

>09_02_0151 - 5035572-5035954,5036309-5036324,5036420-5037040
          Length = 339

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 CCFELIVVADNFGVATYAIFLF 249
           CCF  ++VA   G A YA+FL+
Sbjct: 28  CCFLFLIVAALAGAAAYALFLY 49


>10_08_0416 + 17770384-17770992
          Length = 202

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 196 LIVVADNFGVATYAIFLFALTIWWSVNWGDATACPYTHIE 315
           ++VV   FGV   A+   ++ + WSV  GDA A P  + E
Sbjct: 129 VVVVGILFGVGCGALTAASMYLVWSVLAGDAAAAPSPYDE 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,545
Number of Sequences: 37544
Number of extensions: 352966
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)