Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0709
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51160| Best HMM Match : MIP (HMM E-Value=0.13)                      39   0.004
SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)          29   2.9  
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_13688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_51160| Best HMM Match : MIP (HMM E-Value=0.13)
          Length = 294

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
 Frame = +1

Query: 184 CCFELIVVADNF----GVATYAIFLFALTIWWSVNWGDATACPYTHIEDVI--EGKGDIR 345
           C FEL+V+   +    G+A   I LF     +  +   A  C    +E V+    K    
Sbjct: 48  CIFELVVIGRFYSPYVGIACSFILLFLKNSEYIFDGSAANPCGL--LEGVVCKLKKPWFL 105

Query: 346 KALLKTWAELTGGLLVFKYVQLYWALEISETHKDKAFEECRADLQVPVIYGAIVEGIATC 525
             +L    + +G LL F  ++  W    SE H  +   E    LQVP+I G  +E   T 
Sbjct: 106 NFVLTVLFQFSGALLSFPVMRFMWQKTNSEMHFKQLNSELGTTLQVPIIIGFAIEVFTTF 165

Query: 526 LCRLV 540
           +  +V
Sbjct: 166 VVTMV 170


>SB_18395| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=0.74)
          Length = 730

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -2

Query: 413 YN*TYLKTNKPPVNSAQVLRRALRISPLPSMTSSICV*GHAVASPQFTDHHIVRANKKI 237
           +N T++K  +P V+  Q  +R +     P     +   G A  +P + D H+VRA +++
Sbjct: 333 HNSTHIKILRPAVHILQGDKRPISAPGTPDSMRLMSASGSA--TPSYGDEHVVRAQQRL 389


>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/55 (40%), Positives = 27/55 (49%)
 Frame = +2

Query: 437 PIKTKPLRSAGLIYRSQLSTELLSKV*RPVSVG*FQSPWVT*TLASPPTLMPSLA 601
           P+KT PL S  ++  S  ST        PV      SP VT +LAS P +  SLA
Sbjct: 126 PVKTHPLASKPVVTTSLAST--------PVDTTLTASPVVTTSLASAPVVTTSLA 172


>SB_13688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 262 WWSVNWGDATACPYTHIEDVIEGKGDIRK 348
           WW  +WG     P   + D  E KG+++K
Sbjct: 29  WWRTHWGSTLPQPVVSLLDTYE-KGELKK 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,432,964
Number of Sequences: 59808
Number of extensions: 393178
Number of successful extensions: 916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)