Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0709
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81097-17|CAF31479.2|  269|Caenorhabditis elegans Hypothetical p...    48   7e-06
U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog (hedg...    27   7.9  
AF022975-7|AAB70670.1|  115|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z81097-17|CAF31479.2|  269|Caenorhabditis elegans Hypothetical
           protein K07A1.16 protein.
          Length = 269

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 1/124 (0%)
 Frame = +1

Query: 178 CGCCFELIVVADNFGVATYAIFLFALTIWWSVNWGDATACPYTHIEDVIEGKGDIRKALL 357
           C   F++  + DN+G+    + +  + +       DA A P   + +       IR+ + 
Sbjct: 50  CVPMFDVGTILDNYGLLGVFVEITVIELANCYFQRDAVAHPCPLVTNCYRKSKAIRRGIY 109

Query: 358 KTWAELTGGLLVFKYVQLYWALEISETHKDKA-FEECRADLQVPVIYGAIVEGIATCLCR 534
               +L    L +   +L+W++ +   H +    E C +DL V +  G I+EG+AT + +
Sbjct: 110 VFLVQLAAAYLSYFVARLFWSIGVHPIHLELLDAESCSSDLTVAITTGCIIEGVATFVAK 169

Query: 535 LVSK 546
              K
Sbjct: 170 WFEK 173


>U64857-7|AAC25861.2|  373|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 8 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 566 GFKSPKDFETNRQRQVAIPSTIAP 495
           GF  P D  +N QR   IP+T AP
Sbjct: 34  GFTFPADAASNFQRDAYIPATFAP 57


>AF022975-7|AAB70670.1|  115|Caenorhabditis elegans Hypothetical
           protein K09C6.3 protein.
          Length = 115

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 112 ERAAWRNEPAVTSRRMKSVDTTNRSERDSVDLPRAEF 2
           +RA  + EP     RMK + +T      ++DLP  EF
Sbjct: 62  KRAHKKKEPRRVFTRMKGIMSTTNFIASTIDLPMVEF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,720
Number of Sequences: 27780
Number of extensions: 288010
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)