Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0709
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    30   1.0  
At5g06805.1 68418.m00769 reverse transcriptase-related low simil...    27   7.3  

>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -1

Query: 417 PIQLNVLKDQQTSSQLSPSLEKGLANITFAFDDVLDMRVRACSSVAPVHRPP 262
           P+++N LK     S +SP ++  +++   +F   L  ++R  S ++P   PP
Sbjct: 77  PLKINPLKGLTNRSSVSPLVQSEVSSKVSSFGSSLASKLRLSSKLSPPPPPP 128


>At5g06805.1 68418.m00769 reverse transcriptase-related low
           similarity to reverse transcriptase [Arabidopsis
           thaliana] GI:976278
          Length = 594

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 244 LFALTIWWSVNWGDATACPYTHIED 318
           LFALT+WW   W     C Y   ED
Sbjct: 435 LFALTVWWGWKW----RCGYVFGED 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,520
Number of Sequences: 28952
Number of extensions: 274702
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)