Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0708
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.3  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   2.3  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   2.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   7.0  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   7.0  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.2  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   9.2  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 287  DGMQTACAKCTDKQKVSARKIVKHIK--QHEADYWEQMKAKY 406
            +G Q  C  C D  K    +++KH+K  + E+ Y ++++ +Y
Sbjct: 1360 NGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSKKLEEEY 1401


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 39  ESSVWGDIAF-VLIKTIADMKCLTIAALLFVAGLSIAEKYTDKYDNIDVDEILENRKLLV 215
           E S +G IAF VLI     +  +T+     + G+SI ++      N + D  +ENR L  
Sbjct: 112 EKSTFGKIAFFVLIGLTCLILLITMILEPGLIGISIMKRLIGDNGNDERDYFVENRLLSS 171

Query: 216 P 218
           P
Sbjct: 172 P 172


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 308 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 418
           A  +D+++   R  V H K H   Y +  K  +DPKD
Sbjct: 12  AASSDEERPEMRS-VSHSKSHLEGYDDDHKIAFDPKD 47


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 175 MLSYLSVYFSAIDKPATNKSAAIVRHFMSAM 83
           +++ LSVY+S   +   +K   +V+HFM+++
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFMNSL 570


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 123 FVAGLSIAEKYTDKYDNID-VDEILENRKLL 212
           F+  ++I EKY + YD+++ VDE   ++ ++
Sbjct: 734 FLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 330 RCQPERSLNTLSSTKLITGSR*RPNMIPKMNSK 428
           +  PE    ++S T+  T  +  P+ +PKMN K
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPSTVPKMNPK 464


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 150  KYTDKYDNIDVDEILE 197
            +Y DK D  DVDEI E
Sbjct: 1038 EYIDKLDKYDVDEIAE 1053


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 420 SSLGSYLAFICSQ*SASCCLMCLTI 346
           S + SYL FI S     C  +CL I
Sbjct: 218 SEIRSYLEFILSNLDLECLTLCLKI 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,012
Number of Sequences: 5004
Number of extensions: 41945
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)