Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0708
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199...    30   1.0  
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693...    30   1.3  
01_06_1125 + 34683184-34684776                                         27   7.1  
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786...    27   9.3  
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809...    27   9.3  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    27   9.3  

>11_06_0315 +
           22318155-22318210,22319743-22319769,22319868-22319990,
           22320867-22321110,22321487-22321981
          Length = 314

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +2

Query: 236 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPK 415
           ++ +   D KELK  +KD  +    K +D+ K  + K V   +       +   + + P 
Sbjct: 227 EQKKALKDSKELKKALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPT 286

Query: 416 DEFKEIY 436
            E+  +Y
Sbjct: 287 SEYHSVY 293


>08_02_0981 +
           23266174-23266689,23268389-23268549,23269068-23269309,
           23270180-23270284,23270746-23270902,23271860-23272028,
           23272598-23272638,23273151-23273216,23273524-23273779
          Length = 570

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 335 SARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYEGFLAGQN*TCYKCLRWYNRI 499
           S  K +KHI  ++  + + ++ KYD P D FK + +  +A  + +C  C+    +I
Sbjct: 374 SIAKTMKHIASNQEAFNQSLRWKYDGPSDSFKALID--MAAVHSSCRLCIHVATKI 427


>01_06_1125 + 34683184-34684776
          Length = 530

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 365 QHEADYWEQMKAK-YDPKDEFKEIYEGFLAGQ 457
           +  A Y+E+MKAK + P+ + +E+ + +L+G+
Sbjct: 475 EESAKYYEEMKAKGFPPEKKTEEMIQAWLSGR 506


>09_02_0362 +
           7860088-7860197,7861606-7861636,7861738-7861801,
           7861922-7862052,7863575-7863784,7863891-7863956,
           7864868-7865075,7866270-7866325,7866406-7867128,
           7868246-7868299,7868667-7868695,7869501-7869585,
           7870032-7870202,7870246-7870827
          Length = 839

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 347 IVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQ 457
           IV+H    +    +Q + +  P  ++ +I+EG L+GQ
Sbjct: 503 IVQHPNAQQQQQQQQQQQQQQPPPKYVKIWEGTLSGQ 539


>07_03_1696 - 28779455-28779733,28779813-28780074,28780805-28780956,
            28781765-28781961,28782258-28782462,28782737-28782982,
            28783603-28783719,28784206-28784397,28784480-28784693,
            28784835-28784926,28784952-28785001,28785494-28785812,
            28785908-28786068,28786407-28786650,28787212-28787467,
            28787634-28787834,28788568-28788910,28789003-28789064,
            28789645-28789851,28790170-28790978
          Length = 1535

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
 Frame = +3

Query: 225  KC--YWTKAAALPMGRNLKLISKTECRQR-----VRSVQINRRCQPERSLNTLSSTKL-I 380
            KC  Y T+ AA   GR+ K I    CRQR     V  V  N+R   +R +  L+ + + +
Sbjct: 1239 KCCLYMTEQAAAHFGRSKKWIMCPTCRQRTDLENVAFVVENQRGNADREIEDLAESAISV 1298

Query: 381  TGS 389
             GS
Sbjct: 1299 QGS 1301


>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
            9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 221  HKMLLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKA 400
            +K  L +G    DG+ +   I +  + A  +   + K    +I+K +K+   D +E+MK 
Sbjct: 1260 YKECLTKGVDPLDGEYIDWKIIEKFEEASPQIKKELK---EEILKELKKEMNDKFEEMKK 1316

Query: 401  KYDPKDE 421
             YD K E
Sbjct: 1317 AYDEKFE 1323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,578
Number of Sequences: 37544
Number of extensions: 268233
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)