Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0708
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   1.5  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   5.9  
At5g22460.2 68418.m02620 esterase/lipase/thioesterase family pro...    27   7.8  
At5g22460.1 68418.m02619 esterase/lipase/thioesterase family pro...    27   7.8  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   7.8  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 284 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 445
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 263 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 376
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At5g22460.2 68418.m02620 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
           [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Psychrobacter immobilis}; contains Interpro entry
           IPR000379
          Length = 340

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 75  IKTIADMKCLTIAALLFVAGLSIAEKYTDKYDNIDVDEILENRKLLVPYIKCYWTKAAAL 254
           I+ +AD   L I    +V G+S+   Y+       +   L    L+VP++  +WTK    
Sbjct: 120 IQELADK--LKIGPKFYVLGISLGA-YSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQE 176

Query: 255 PMGRNLKLISKTE 293
            + + L+L+ K +
Sbjct: 177 KLSKALELMPKKD 189


>At5g22460.1 68418.m02619 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
           [Rhodococcus sp. RHA1] GI:8978311, SP|Q02104 Lipase 1
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Psychrobacter immobilis}; contains Interpro entry
           IPR000379
          Length = 340

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 75  IKTIADMKCLTIAALLFVAGLSIAEKYTDKYDNIDVDEILENRKLLVPYIKCYWTKAAAL 254
           I+ +AD   L I    +V G+S+   Y+       +   L    L+VP++  +WTK    
Sbjct: 120 IQELADK--LKIGPKFYVLGISLGA-YSVYSCLKYIPHRLAGAVLMVPFVNYWWTKVPQE 176

Query: 255 PMGRNLKLISKTE 293
            + + L+L+ K +
Sbjct: 177 KLSKALELMPKKD 189


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 59  HRFCVD*NHCRHEVSNNCCTFIRGGLIDCR 148
           HR C     C +E+  NCC  IRGG +  R
Sbjct: 333 HRSCPK---CSYELCLNCCQEIRGGWLSDR 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,312,067
Number of Sequences: 28952
Number of extensions: 219871
Number of successful extensions: 563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)