Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0707
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7MSJ8 Cluster: Putative uncharacterized protein; n=1; ...    38   0.11 
UniRef50_Q0SG32 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_O13633 Cluster: HLJ1 PROTEIN; n=1; Schizosaccharomyces ...    32   6.9  

>UniRef50_A7MSJ8 Cluster: Putative uncharacterized protein; n=1;
           Vibrio harveyi ATCC BAA-1116|Rep: Putative
           uncharacterized protein - Vibrio harveyi ATCC BAA-1116
          Length = 291

 Score = 38.3 bits (85), Expect = 0.11
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 224 PMNNSLYTTRSAAANYRRRHIGLGCSDECLPLHPYTAADLHET 352
           PM++  Y  R A  NYR    G+G   EC+  HP     LH T
Sbjct: 99  PMSSEKYLLRKAPHNYRTAKSGMGSFSECVRKHPNAIRSLHPT 141


>UniRef50_Q0SG32 Cluster: Putative uncharacterized protein; n=1;
           Rhodococcus sp. RHA1|Rep: Putative uncharacterized
           protein - Rhodococcus sp. (strain RHA1)
          Length = 81

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 121 PWFHKITQSFLS*VMKISESRVRQRLGFNELLGRRPR 11
           P FH I Q   +  M +++S  RQR+  N L  R PR
Sbjct: 8   PGFHTIPQRVANQCMDVTQSPARQRIRVNTLFDRHPR 44


>UniRef50_O13633 Cluster: HLJ1 PROTEIN; n=1; Schizosaccharomyces
           pombe|Rep: HLJ1 PROTEIN - Schizosaccharomyces pombe
           (Fission yeast)
          Length = 403

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = -1

Query: 236 YYSLVPVLYAILFVFVSV*CKCCLSELNV-YNVKKSFTFTV--VS*NHTILFVLSHENLG 66
           +Y L+P++  ILF F+S       + +N  Y+ ++++ +TV   +  H I + +S ++L 
Sbjct: 265 FYQLLPLIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPRTTAKHNIPYYMSQKDLD 324

Query: 65  K*SKTAIR 42
           K S   IR
Sbjct: 325 KLSSRDIR 332


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,890,499
Number of Sequences: 1657284
Number of extensions: 8134949
Number of successful extensions: 14877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14875
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)