Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0707
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    32   0.045
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    27   1.7  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.2  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = -1

Query: 236 YYSLVPVLYAILFVFVSV*CKCCLSELNV-YNVKKSFTFTV--VS*NHTILFVLSHENLG 66
           +Y L+P++  ILF F+S       + +N  Y+ ++++ +TV   +  H I + +S ++L 
Sbjct: 265 FYQLLPLIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPRTTAKHNIPYYMSQKDLD 324

Query: 65  K*SKTAIR 42
           K S   IR
Sbjct: 325 KLSSRDIR 332


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 223 CQCCTLFCLFLSVFNVNVVCQS*MSIM*KKVSLLPWFHKITQSFLS 86
           C     FC+ +S+FNV +V     S + K+ +L P+F    Q+FLS
Sbjct: 78  CAKVVNFCILISLFNVFLV----WSRLEKRAALFPYFTP-AQAFLS 118


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 220 QCCTLFCLFLSVFNVNVVCQS*MSIM*KKVSLLPWFHKITQSFLS 86
           Q C      + +F   ++ Q   +   + +S LP+FH + +SF S
Sbjct: 210 QLCDSMAFLIQIFPTPLLRQKAANAWIEVLSKLPYFHILDKSFFS 254


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 480 FLHFLSDIYKAL-TSRSQSHTKRLNFMKCNFC*IVSNFFVCVLHVS*RSAAV 328
           F+ +L D   +L    S S  K + F     C    N F CV+ V   SAA+
Sbjct: 241 FVIYLEDTLASLDVVESLSPKKNVRFWTSELCTQCPNLFDCVITVGDDSAAL 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,712
Number of Sequences: 5004
Number of extensions: 36823
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)