Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0707
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.25 
SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     27   7.1  
SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)           27   7.1  

>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 315 HFIPTPRPTFTRHATHRRKSLRRFNKSYTS*NSIFSYVTASAKLELYKYQTKNAKN*HIK 494
           H+  T R     H TH +++L+  N ++T   ++++Y T       Y Y T      H  
Sbjct: 323 HYTHTKRALHVLHNTHTKRALQVLNYTHTK-RALYTYYTTRTLSVQYTYYTTRTLTVHFT 381

Query: 495 WAIQ 506
           ++++
Sbjct: 382 YSLR 385



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 309 VFHFIPTPRPTFTRHATHRRKSLRRFNKSYTS*NSIFSYVTASAKLELYKYQTKNAKN*H 488
           V H+  T R     H TH +++LR  N ++T   ++        K  LY Y T    + H
Sbjct: 164 VLHYTYTKRALHVLHYTHTKRALRVLNFTHTK-RALHVLHYTHKKRALYTYYTTRTLSVH 222


>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 226 WCQCCTLFCLFLSVFNV 176
           WC CC+LFC +   F V
Sbjct: 103 WCFCCSLFCCYSFSFVV 119


>SB_12417| Best HMM Match : Antimicrobial11 (HMM E-Value=7.9)
          Length = 219

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 324 PTPRPTFTRHATHRRKSL 377
           PTPRP F+R A+ RR S+
Sbjct: 200 PTPRPQFSRKASIRRDSI 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,843,695
Number of Sequences: 59808
Number of extensions: 278101
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)