Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0706
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.33 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 272 EFCGQKCSACSRIYIPQSLYEPIKTGLLAER 364
           EF   KCS C R +  Q  Y  +K  L+  R
Sbjct: 268 EFGDSKCSLCQRRFEEQGNYSCLKVDLIFTR 298



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 597 GPKISSVMSLSCGSVVSMMV 538
           G ++SSV+SLS  S+ S ++
Sbjct: 13  GGRLSSVLSLSLTSLASSLI 32


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = +2

Query: 56  GRVITSSPYLAGINFTGSVPTFNWLWNEVGKNLNTY 163
           G +  + P+ A       V  F W WN++ K    +
Sbjct: 17  GEIAHNDPHFAP-GHDAIVHLFEWKWNDIAKECEQF 51


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 597 GPKISSVMSLSCGSVVSMMV 538
           G ++SSV+SLS  S+ S ++
Sbjct: 13  GGRLSSVLSLSLTSLASSLI 32


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 597 GPKISSVMSLSCGSVVSMMV 538
           G ++SSV+SLS  S+ S ++
Sbjct: 13  GGRLSSVLSLSLTSLASSLI 32


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 597 GPKISSVMSLSCGSVVSMMV 538
           G ++SSV+SLS  S+ S ++
Sbjct: 13  GGRLSSVLSLSLTSLASSLI 32


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 156 IHIVTIPDSLENVEERITTLYTPLLIYK 239
           +H +T+P+ L  + +    LY+  L  K
Sbjct: 132 VHTITVPNKLLRISQDGDILYSMRLTIK 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,801
Number of Sequences: 438
Number of extensions: 3838
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)