Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0705
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.3  
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   6.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   6.9  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   6.9  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 389 QKKKHIINLPTIILSIYKWLEQIRCLYRTAFNFHFRRKKAAILNTKTKIVSARTSHPESV 210
           QK    + LP ++ ++ K +EQ+ C Y  +F        ++IL  +  IV     H  S 
Sbjct: 785 QKNLWQVILPNVVPNLLKLVEQLHCCYEPSFISGLGMHNSSIL--QKSIVERFWLHGVSQ 842

Query: 209 RRHSYFREE 183
              + F EE
Sbjct: 843 ISKNQFLEE 851


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 367 LIMCFFFWRKSY 402
           +++CFFFWR SY
Sbjct: 130 MMLCFFFWRISY 141


>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 252 LRVKDCSFLPPKMEVKRCPIKTSNLLK 332
           ++  D  FLPP++  K C  +  +L++
Sbjct: 179 VKAADIDFLPPQLSFKNCEFRIYDLVQ 205


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 371 INLPTIILSIYKWL 330
           +NLPT+  S YKWL
Sbjct: 62  LNLPTLSSSYYKWL 75


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 327 LKPFIYT*NYSR*INNVFFFLAKIV 401
           L+P ++   YSR  N +FFF   IV
Sbjct: 242 LEPLVHLHEYSRRSNTLFFFYLPIV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,858
Number of Sequences: 5004
Number of extensions: 36605
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)