Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0705
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    31   0.57 
01_07_0235 + 42198662-42199615,42200129-42200746                       30   0.99 
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511...    30   1.3  
03_02_1004 + 13133261-13133971,13134052-13134915                       27   7.0  
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    27   7.0  
02_01_0594 - 4413016-4413091,4413201-4413268,4413387-4413482,441...    27   9.2  

>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
            6087354-6088391,6089733-6089925,6090326-6090375,
            6090470-6090744,6091114-6091180,6091189-6091278,
            6091301-6091381,6091435-6091593
          Length = 1414

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 272  AAILNTKTKIVSARTSHPESVRRHSYFREELSWVFIK-AYRCFIAVQFRSFQPVYGAHES 96
            A+I   K +       H E+ R    FR +LSW+F+K A R    V  +     Y A ES
Sbjct: 1305 ASITRCKAEERKIWALHHEAARNDLCFRYKLSWLFLKSALRIGSTVTLKLMNKEYAAKES 1364

Query: 95   FQ 90
             +
Sbjct: 1365 LK 1366


>01_07_0235 + 42198662-42199615,42200129-42200746
          Length = 523

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 340 INGLSKLDVFIGQRLTSILGGRKLQSLTR 254
           +NG + +D+F G RL  +LG R L++  R
Sbjct: 215 MNGFNLIDLFPGSRLARVLGARSLRATKR 243


>02_05_0924 -
           32749682-32750200,32750756-32750959,32751062-32751109,
           32751769-32751819,32751907-32752032,32752117-32752257,
           32752750-32752971,32753160-32753312,32753536-32753718,
           32753964-32754110,32754212-32754319,32754426-32754530,
           32754824-32754928,32755243-32755310,32755498-32755576,
           32755876-32755935,32756023-32756076,32756168-32756233,
           32756701-32756753,32757042-32757096,32757645-32757787,
           32758236-32758333,32758436-32758716
          Length = 1022

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 284 RRKKAAILNTKTKIVSARTSHPESVRRHSYFREELSWV 171
           R  K  +++TK    S  + HP   RRHS+  EEL+++
Sbjct: 502 RLTKLILVSTKATQTSRFSPHPGPRRRHSFGEEELAYL 539


>03_02_1004 + 13133261-13133971,13134052-13134915
          Length = 524

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 211 SGDIATSERNCLGYL*RHIGASLQSSFGLSNPYMAP 104
           +G+    +R+ L  L RH  A+ Q  +GLS P+ AP
Sbjct: 267 AGEFQCYDRHMLARLKRHAVAAGQPLWGLSGPHDAP 302


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 9   FGTRSDSTRPPAGTCTGGHTSRTWRYGLEGFVGAIYGLE 125
           FG  +D    P+   TGGH    W   L+ +  A   LE
Sbjct: 407 FGVTNDDVEGPSILLTGGHNGINWLSSLDSYCPATDILE 445


>02_01_0594 -
           4413016-4413091,4413201-4413268,4413387-4413482,
           4413600-4413689,4413760-4413886,4413983-4414038,
           4414203-4414379,4414464-4415057
          Length = 427

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 256 RRRRS*ALERPTQNLSGDIATSERNCLGYL*RHIGASLQSSFGLSN 119
           RRRR  +     QNL G   TS++N LG L  ++  S    +G  N
Sbjct: 214 RRRRGRSEFVVAQNLDGIFCTSDKNFLGTLSSNLVGSRYRIWGQGN 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,722,218
Number of Sequences: 37544
Number of extensions: 226293
Number of successful extensions: 615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)