Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0705
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.    28   3.6  
Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical
           protein F08G12.10 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 280 LLKWKLNAVR*RHLICSSHLYILRIIVGRLIMCFFFW 390
           L  +K+  +  +H    S + IL +I+ +L +CF+FW
Sbjct: 241 LCDFKVRNLGQQHQHTVSCIMILNMIIEKLYICFYFW 277


>AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 280 LLKWKLNAVR*RHLICSSHLYILRIIVGRLIMCFFFW 390
           L  +K+  +  +H    S + IL +I+ +L +CF+FW
Sbjct: 241 LCDFKVRNLGQQHQHTVSCIMILNMIIEKLYICFYFW 277


>Z70266-6|CAD57691.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 350 LSIYKWLEQIRCLYRTAFNFHFRRKKAAILNTKTKIVSARTSHPESVR 207
           +S  K +   R L R  ++FH     A+I+N  T   + R  HP+S+R
Sbjct: 384 ISKEKRMRIFRSLVRNLYDFHREEILASIINEYTDWENPR-DHPKSIR 430


>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 350 LSIYKWLEQIRCLYRTAFNFHFRRKKAAILNTKTKIVSARTSHPESVR 207
           +S  K +   R L R  ++FH     A+I+N  T   + R  HP+S+R
Sbjct: 384 ISKEKRMRIFRSLVRNLYDFHREEILASIINEYTDWENPR-DHPKSIR 430


>AL023827-4|CAD57709.1|  795|Caenorhabditis elegans Hypothetical
           protein C40C9.5b protein.
          Length = 795

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 350 LSIYKWLEQIRCLYRTAFNFHFRRKKAAILNTKTKIVSARTSHPESVR 207
           +S  K +   R L R  ++FH     A+I+N  T   + R  HP+S+R
Sbjct: 384 ISKEKRMRIFRSLVRNLYDFHREEILASIINEYTDWENPR-DHPKSIR 430


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 350 LSIYKWLEQIRCLYRTAFNFHFRRKKAAILNTKTKIVSARTSHPESVR 207
           +S  K +   R L R  ++FH     A+I+N  T   + R  HP+S+R
Sbjct: 384 ISKEKRMRIFRSLVRNLYDFHREEILASIINEYTDWENPR-DHPKSIR 430


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 229 VLALTIFVFVLRIAAFFLLKWKLNAVR*RHLICSSHLYILRIIVGRLIMCFFF 387
           VL + + +F+  +  F  +       + RHL    H+YI + +  + IM  FF
Sbjct: 191 VLYIAVNMFICLLTPFINISIITGMKKNRHLHSQQHIYIQKYMFIQSIMVLFF 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,170,877
Number of Sequences: 27780
Number of extensions: 198735
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)