Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0704
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    31   0.14 
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    28   1.0  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.8  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   1.8  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   3.1  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    26   5.4  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   7.1  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    25   9.4  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    25   9.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
 Frame = +3

Query: 27   SLQINKAKTINISSVNLMSNIEQGSNGGAN--IKPVARPSIHYHK---GYCPFAGGE-FT 188
            +LQ N   +    + N+ ++ +   NG A+  +   ++PS    K   G+   AG   F+
Sbjct: 609  TLQFNFGSSFGKPTSNIFNDKKTSENGLASSTVASESKPSAPESKPSSGFGNTAGSSPFS 668

Query: 189  MDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHPIDVPRKPITRRQSSVDPQIENR 368
             +  + S+ + P   N  +    G+DE ++++S  A       KP T   ++  PQ    
Sbjct: 669  FNLTKESKEVPPT--NSFSFAKKGKDEANDSLSAKASTPFSFAKPNTENVTTTAPQFSFN 726

Query: 369  FCKNESEILSKSLP 410
            F K  ++  +  LP
Sbjct: 727  FTKPNTDAKTNLLP 740


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
 Frame = +3

Query: 270 LDNTISKHAHPID----VPRKPITRRQSSVDPQ 356
           L +    H  P+D    VP +P+T++ +SVDPQ
Sbjct: 411 LKSITDTHYFPVDELEQVPEQPVTQQPASVDPQ 443


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 587 FTIKTFLMFCKRSSFILT 534
           F+ KTF++FC  SSFI+T
Sbjct: 251 FSQKTFIIFCFLSSFIIT 268


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 258 GQDELDNTISKHAHPIDVPRKPITRRQSSVDPQIENRFCKN-ESEILSKSL 407
           G + LD  +   + PI    +P+  RQS +  +IE   C+N + E++ KSL
Sbjct: 690 GFEVLDEEVDLVSEPIP---EPLRERQSQLLYEIEAEECQNKQKELIEKSL 737


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +3

Query: 252 GYGQDEL-DNTISKHAHPIDVPRKPITRRQSSVDPQIEN---RFCKNESEILS-KSLPAY 416
           G+G+  L D+TI  ++HP  +P   I + +    P + N   RF K+ S+  + +S    
Sbjct: 170 GWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNSQERFSKSPSDGQNVRSRAKK 229

Query: 417 FPSHLDFSSNSEM 455
            PS +    + E+
Sbjct: 230 IPSGMSAEESDEL 242


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
 Frame = +3

Query: 30  LQINKAKTINISSVNLMSNIEQGSNGGANIK-------PVARPSIHYHKGYCPFAGGEFT 188
           L  +++ T++ + ++   N+  GSN G N +       P+  P++H             T
Sbjct: 225 LASDQSPTVSSNHIHASGNLALGSNSGLNPRSPNSFSSPLDNPALH-------------T 271

Query: 189 MDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHPIDVPRKPITR----RQSSVDPQ 356
           +D   V+ S+SP    L+N+    Q   + T   H   I VP   +++      SSV   
Sbjct: 272 VDSTNVNGSLSP----LSNSSSINQVHQNET---HGSTISVPNPNLSQMGPSHSSSVPSN 324

Query: 357 IENRFCKNESEILSKSLPAY----FPSHLDFSSNS 449
           +     +NE+   + S+P+     FPS L  S+++
Sbjct: 325 LSPNPAQNENP-STTSIPSINNQPFPSGLSASNSN 358


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 18   LIESLQINKAKTINISSVNLMSNIEQGSNGGANIKPVARPSIHYHKGYCPFAGGEFTMDG 197
            L+E L+ NK   I +  +    N E+  NG   +K V R +   H     F  G    D 
Sbjct: 841  LLEGLEQNKISKI-LLGLAAKPNFEE--NGVVFLKAVTRDTSKLHLLELLFMNGLLLPDS 897

Query: 198  NRVSRSISP 224
             ++S  +SP
Sbjct: 898  EQLSEHVSP 906


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 324 ITRRQSSVDPQIENRFCKNESEILSKSLPAY 416
           +T  Q S+   +    C    E+LSK+LPA+
Sbjct: 370 VTSMQMSISSSLSPDQCAKAIELLSKALPAW 400


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 127 TGLILAPPLLPCSILL----IKFTEEIFIVFALFIWRLSIRYCC 8
           TG+IL   L+P S+ +    +K  + IFI F   ++   ++Y C
Sbjct: 506 TGVILFQNLVPISLYISIEIVKTIQAIFIYFDKDMYYKKLKYAC 549


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 93  QGSNGGANIKPVARPSIHYHKGYCPFAGG 179
           + S   +++   ++P +H  +GYCP   G
Sbjct: 288 ESSPSRSSVLSTSKPEVHETEGYCPHKTG 316


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 588 VHDKNFLDVL*KIQFHFDS 532
           +H KNFL+ L +++ H DS
Sbjct: 3   IHGKNFLETLKELEKHVDS 21


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 159 YCPFAGGEFTMDGNRVSRSISPIGENLANT--EGYGQDELDNTISKHAHPIDVPRKPITR 332
           Y  FA  +  +DG  V +S   +GE LA+T  + +G D ++   +    P       +  
Sbjct: 270 YVYFARPDSVIDGLSVYQSRLNMGEKLAHTIMKRFGPDYMEKIDAVIPVPDSARTSALAL 329

Query: 333 RQSSVDPQIENRFCKN 380
            Q++  P +E  F KN
Sbjct: 330 AQTAQLPYVE-AFIKN 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,703
Number of Sequences: 5004
Number of extensions: 54583
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)