Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0704
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793 29 2.4
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 29 4.2
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 28 5.6
04_04_0570 - 26297588-26298190 28 5.6
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 7.4
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 27 9.7
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 27 9.7
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302... 27 9.7
>08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793
Length = 272
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +3
Query: 171 AGGEFTMDGNRVSRSISPIGENLAN-TEGYGQDELDNTISKHAHPIDVPRKPITRRQSSV 347
+G E+T V ++ E + G G+DE + +H I V R + +
Sbjct: 22 SGDEYTQSDEEVEENVEGASEASGDDVSGSGEDEDEEICCEHEESIVVYHLEFLRPRDTP 81
Query: 348 DPQIENRFCKNESE 389
DP+ F K+ E
Sbjct: 82 DPRFHTAFQKSVYE 95
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 327 TRRQSSVDPQIENRFCKNESEILSKS-LPAYFPSHLDFSSNS 449
+R QSS D I N+ +N+SE+ + S L FP H N+
Sbjct: 3397 SRMQSSADKSILNQEYENKSEVYNGSNLKTMFPDHQHNKQNN 3438
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +3
Query: 180 EFTMDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHP 302
E+T+ G+ V+R ISP NLA G GQD L +++H P
Sbjct: 115 EYTIGGSAVARGISP---NLALFFG-GQDSLPWFLARHELP 151
>04_04_0570 - 26297588-26298190
Length = 200
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 136 GRATGLILAPPLLPCSILLIKFTEE 62
G GL +AP +LPC +L+ + T+E
Sbjct: 49 GHGGGLTMAPRVLPCPLLVAQETDE 73
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 30 LQINKAKTINISSVNLMSNIEQGSNGGANIKPVARPSIHYHKGYC--PFAGGE-FTMDGN 200
+Q N A +S+V +M I GSN A++ P +RP+ H +GGE N
Sbjct: 259 VQENPADRPKLSAVTMM--IGGGSNSTASLNPPSRPAFCMHPADATRTASGGETAAASAN 316
Query: 201 RVS 209
RVS
Sbjct: 317 RVS 319
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 42 KAKTINISSVNLMSNIEQGSNGGANIKPVARPSIHYHKGYCPFAGGEFT 188
K T+N+ N +S + QG AN++ + P I Y P E T
Sbjct: 661 KLHTMNLKCCNYLSELPQGIKFLANLRHLELPRIDNWNVYMPCGISELT 709
>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 647 HNKSRNDYACLNYEAILSLLFTIKTFLMFCKRSSFI 540
HN N++ E I +LL +I FLM S+FI
Sbjct: 1134 HNYGANEWLGFRLELIGTLLLSITAFLMISLPSNFI 1169
>02_05_1234 -
35127322-35128378,35128423-35128467,35130016-35130275,
35130610-35131365,35132115-35132122,35133559-35134327
Length = 964
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +3
Query: 132 RPSIHYHKGYCPFAGGEFTMDGNRVSR--SISPIGENLANTEGYGQDELDNTISKHAHPI 305
R S ++ + C +G + + +G + SIS + N ++ + S A
Sbjct: 243 RQSHNHERKECSLSGLQGSQNGEDSMKPVSISDVATTSTNDHTVAHGDIIDDQSMDADEK 302
Query: 306 DVPRKPITRRQSSVDPQIENRFCKNESEI 392
V RK +TR ++SV E++ E E+
Sbjct: 303 KVVRKSLTRIRTSVGASEESQLIGREKEM 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,689,169
Number of Sequences: 37544
Number of extensions: 312728
Number of successful extensions: 652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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