Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0704
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50334| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 31 1.1
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 29 3.3
SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 28 5.7
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20818| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 27 9.9
SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_50334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 33.9 bits (74), Expect = 0.11
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 177 GEFTMDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHPIDVPRKPITRRQ--SSVD 350
G T+ +R R+ P+G G Q + + +HP+ + RK +T R+ SSVD
Sbjct: 34 GHMTLRTSRPERTSDPVGPPDGYDLGNVQVFAGSYLGPGSHPVSIDRKRMTPREWNSSVD 93
Query: 351 PQIENRFCKNESEILS-KSLPAYFPSHLD 434
Q E F NES+ S +S + PS D
Sbjct: 94 VQ-EYEFI-NESDFSSLRSSLVHCPSSTD 120
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +3
Query: 72 NLMSNIEQGSNGGANIKPVARPSIHYHKGYCPFAGGEFTMDGNRVSRSISPIGENLANTE 251
+LMS +QG + N+ HY G N V ++ +G+++ N
Sbjct: 373 HLMS--DQGMHHNGNLDHYQEHPYHYGNTMDDHVGNTVGGMDNHVDNTVGAMGDHVGNAM 430
Query: 252 GYGQDELDNTI 284
G D +DNTI
Sbjct: 431 GAMGDHVDNTI 441
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 299 MSMLTDSIIKFILPIAFCVSQILSNW*YTSGNSIPIHCEFPTSKWAIAFVI 147
+S+L D I+F P+ F Q + + G+++ I C F T W FV+
Sbjct: 244 LSILKDGDIRFSPPLPFEKQQAIDS--IKVGSALKIICRFRTRFWQKTFVV 292
>SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 243 NTEGYGQDELDNTISKHAHPIDVPRKPITRRQSSV 347
NT D TIS A P VP KP++ RQ V
Sbjct: 371 NTPNTRSDTPSGTISPQATPKPVPPKPLSARQQVV 405
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 28.3 bits (60), Expect = 5.7
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Frame = +3
Query: 24 ESLQINKAKTINISSVNLMSNIEQGSNGGANIKPVARPSI-HYHKGYCPFAGGEFTMDGN 200
ES ++ A+ N + SN+ SN ++ R +Y KG+CP+A T++G
Sbjct: 180 ESNNLSIAENDNFLYTIVRSNVLFSSNVYGSVVCFERNQYKNYSKGFCPYAFKNKTLNGA 239
Query: 201 RVSRSISPIGENLANTEGYGQDELDNTISKHAHPIDVPRKPITRRQSSVDPQIENR 368
+ IS + L N + + ++ + ++ H P TR ++ I NR
Sbjct: 240 VHVKDISVEHDYLDNPDIWWKETKERSL--HLVPKQTTEFYSTRYNATHANPIYNR 293
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 192 DGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHPIDVPRKPITRRQSSVDPQIENRF 371
D N S S SP E GY +DN+ S+ + P +P+ R S+ P+ R
Sbjct: 926 DNNSYSESDSPRREYSDPMRGYPNSSIDNS-SEADSSLGSPSRPVGRSVSA--PETRFR- 981
Query: 372 CKNESEI-LSKSLPAYFP 422
+ E E+ + +S A FP
Sbjct: 982 VEGEDEVGVDESKSATFP 999
>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 207 SRSISPIGENLANTEGYGQDELDNTISKHAHPID 308
SR +SP +N+A T+ Y + +D + K P D
Sbjct: 398 SRCLSPTDKNIAETKKYFGNRVDMMLRKGVFPYD 431
>SB_20818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 51 TINISSVNLMSNIEQGSNGGANIKPVARPSIHYHKGYCPFAGGEFTMDGNRVS 209
T++ISS+N I+ SNG N+ + + H+ Y GG F G+ ++
Sbjct: 11 TVDISSLNPNETIKIFSNGTHNLTTIRQ---LVHRAYDQIPGGTFPTPGSSMN 60
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 293 MLTDSIIKFILPIAFCVSQILSNW*YTSGNSIPIHC 186
+ D +K L I +SQ S W Y +GNS I+C
Sbjct: 302 LTADDAMKKALEITLDISQ--SGWEYEAGNSFNIYC 335
>SB_16986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 51 TINISSVNLMSNIEQGSNGGANIKPVARPSIHYHKGYCPFAGGEFTMDGNRVS 209
T++ISS+N I+ SNG N+ + + H+ Y GG F G+ ++
Sbjct: 276 TVDISSLNPNETIKIFSNGTHNLTTIRQ---LVHRAYDQIPGGTFPTPGSSMN 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,080,345
Number of Sequences: 59808
Number of extensions: 356409
Number of successful extensions: 1035
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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