Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0704
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    30   1.6  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     30   1.6  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    30   1.6  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    29   2.1  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z34533-4|CAA84299.2|  577|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 444 CY*NQDETENRQVKILKEFHSHSYKNDFLFGDQLN 340
           C  N+   E   VK+L   H H YK  F  G+++N
Sbjct: 149 CDSNRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMN 183


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 444 CY*NQDETENRQVKILKEFHSHSYKNDFLFGDQLN 340
           C  N+   E   VK+L   H H YK  F  G+++N
Sbjct: 149 CDSNRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMN 183


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 444 CY*NQDETENRQVKILKEFHSHSYKNDFLFGDQLN 340
           C  N+   E   VK+L   H H YK  F  G+++N
Sbjct: 149 CDSNRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMN 183


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 349 IPK*KIVFVRMRVKF--FQNLYLPIFRLILISVAILKWKTVNYI*VMFLIVHRTLLEAEV 522
           IP  +I   ++  K+  F N  +P+   I+IS     W+ +  I V+  I+   ++    
Sbjct: 156 IPDQEIAIKKLFKKYPRFYNFEIPVSSFIVISDEDRSWQKLRRISVISFILLEIIVFG-- 213

Query: 523 ILMRVKMKLDL 555
           IL+RVK+KL +
Sbjct: 214 ILLRVKLKLSM 224


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 349 IPK*KIVFVRMRVKF--FQNLYLPIFRLILISVAILKWKTVNYI*VMFLIVHRTLLEAEV 522
           IP  +I   ++  K+  F N  +P+   I+IS     W+ +  I V+  I+   ++    
Sbjct: 156 IPDQEIAIKKLFKKYPRFYNFEIPVSSFIVISDEDRSWQKLRRISVISFILLEIIVFG-- 213

Query: 523 ILMRVKMKLDL 555
           IL+RVK+KL +
Sbjct: 214 ILLRVKLKLSM 224


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 249 EGYGQDELDNTISKHAHPIDVPRKPITRRQ 338
           E Y + + D +++  AHP D+ R P+++R+
Sbjct: 176 ESYRESDEDYSVNDFAHPPDLERHPLSKRR 205


>Z34533-4|CAA84299.2|  577|Caenorhabditis elegans Hypothetical
           protein B0285.6 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 164 AIAFVIMNTWSSYRFNIGP-PITSLLYITH*IYGRNIYCF 48
           AI  + MNTW+ + FN+G  P  +L + T+ + G +  CF
Sbjct: 539 AITAINMNTWAFWLFNMGTYPDYALRHATN-MTGNSSQCF 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,119,814
Number of Sequences: 27780
Number of extensions: 294446
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)