Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0704
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 435 NQDETENRQVKILKEFHSHSYKND 364
           + DE++N  +K  KEF + S  +D
Sbjct: 89  DDDESDNENIKSQKEFPNSSSSDD 112


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 114 WPPHYFLALYYSLNLRKKY 58
           W P+Y ++L+Y ++    Y
Sbjct: 273 WTPYYVMSLWYWIDRNSAY 291


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 180 PHQQMGNSLCDNEYLVELQV*YWPPHY 100
           PH Q    L  + Y   +Q+ + P H+
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHH 466


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 57   NISSVNLMSNIEQGSNGGANIKPVA 131
            N +++ L   IE+G+N   + KPV+
Sbjct: 1733 NEAAMKLKKRIEKGANPDLSQKPVS 1757


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 439 VAILKWKTVNYI*VMFLIVHRTLLEAEVILMRVKMKLDLL 558
           V IL WK +  +    L V    +  EVI  R K + ++L
Sbjct: 381 VQILGWKELPNVGDEILEVENDKILQEVIKFRQKQRAEIL 420


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 225 IGENLANTEGYGQD 266
           +GENL N + +G D
Sbjct: 355 VGENLHNHQSFGMD 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,824
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)