Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0704
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to MAD...    29   2.7  
At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein si...    29   3.5  
At5g36940.1 68418.m04430 amino acid permease family protein simi...    29   3.5  
At1g58030.1 68414.m06577 amino acid permease family protein simi...    28   4.7  
At3g04980.1 68416.m00541 DNAJ heat shock N-terminal domain-conta...    28   6.1  
At1g16270.1 68414.m01948 protein kinase family protein contains ...    28   6.1  

>At1g01530.1 68414.m00069 MADS-box protein (AGL28) similar to
           MADS-box transcription factor GI:6580943 from [Picea
           abies]; contains Pfam profile PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain)
          Length = 247

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +3

Query: 177 GEFTMDGNRVSRSISPIGENLAN--TEGYGQDELDNTISKHAHP 302
           G F  +GN  S    P G N+ N    GY   +L N   K  HP
Sbjct: 197 GFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQEVKQVHP 240


>At5g45300.1 68418.m05561 glycosyl hydrolase family 14 protein
           similar to beta-amylase GI:13560977 from [Castanea
           crenata]
          Length = 689

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 170 CWWGIHNGWE*SFQKYI-TNWRE 235
           CWWGI  GW  + QKY+ + +RE
Sbjct: 297 CWWGIVEGW--NPQKYVWSGYRE 317


>At5g36940.1 68418.m04430 amino acid permease family protein similar
           to SP|Q09143 High-affinity cationic amino acid
           transporter-1 (CAT-1) {Mus musculus}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 609

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 180 EFTMDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHP-IDVPRKP 323
           E+T+ G+ V+R ISP   NLA   G G+D L   +++H  P +D+   P
Sbjct: 121 EYTIGGSTVARGISP---NLAMIFG-GEDCLPTILARHQIPGLDIVVDP 165


>At1g58030.1 68414.m06577 amino acid permease family protein similar
           to SP|P18581 Low-affinity cationic amino acid
           transporter-2 (CAT-2) (T-cell early activation protein)
           {Mus musculus}; contains Pfam profile PF00324: Amino
           acid permease
          Length = 635

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +3

Query: 180 EFTMDGNRVSRSISPIGENLANTEGYGQDELDNTISKHAHP-IDVPRKP 323
           E+T+ G+ V+R ISP   NLA   G G+D L   +++H  P +D+   P
Sbjct: 132 EYTIGGSAVARGISP---NLALIFG-GEDGLPAILARHQIPGLDIVVDP 176


>At3g04980.1 68416.m00541 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 1165

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +3

Query: 63  SSVNLMSNIEQGSNGGANIKPVARPSIHYHKGYCP---FAGGEFTMDG-NRVSRSISPIG 230
           S  N     E   +    +  V+  S H +KG       +G E  +   N+VS      G
Sbjct: 388 SEPNKKQTAEDNKSPKLAVSGVSSASSHSYKGKAKKNAHSGNEDNLSAKNKVSEGCDGNG 447

Query: 231 ENLANTEGYGQDELDNTISKHAHPIDVP 314
           E+ A     G+ E     +++++P+D+P
Sbjct: 448 EDAALLSKIGRVEKGYKANENSNPLDIP 475


>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 123 PVARPSIHYHKGYCPFAGGEFTMDGNRVS 209
           P+A   I+Y  GY   AG EF  D +R+S
Sbjct: 78  PIAAGDINYPTGYNGHAGSEFGSDVSRMS 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,500
Number of Sequences: 28952
Number of extensions: 268338
Number of successful extensions: 673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)