Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0703
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.8  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    27   2.3  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    26   5.3  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   7.1  

>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 128 KLHFFTFVLLSFVWTSSWVTGAHRHQQCNSHPPP 229
           K H+F  VLL F W S     AH ++   +HPPP
Sbjct: 390 KPHYFNRVLLGFEWNS--YNQAHFNE---AHPPP 418


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 349 TFFFHGVLIFLSFLLISAMKHYGGRGSRCTIKLKFRTHVSRWGVAITLLMS 197
           T F   + +++SFL I   +H G  G    +++K     S   V ITL ++
Sbjct: 323 TLFLWMLAVYVSFLPIMTRRHIGDYGVPDHVRVKLPWQQSANNVLITLFIT 373


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  ICNSSLISIVKGRQTSFPP 88
           +C+  L+S+ +G QT F P
Sbjct: 176 VCHGRLVSVARGEQTYFDP 194


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/53 (20%), Positives = 25/53 (47%)
 Frame = -3

Query: 195 WAPVTHELVHTKLSNTKVKKCNLIFLSISSHWNLLYGGKEVCLPFTILIKLEL 37
           W P +  +V   ++N  +    L F + +++W L +G     + + +L +  L
Sbjct: 11  WNPHSCTVVEKCITNLLITTILLCFFNATTYWKLFFGAMFDFIHYQLLFRNSL 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,399
Number of Sequences: 5004
Number of extensions: 54525
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)