Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0703
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    30   1.4  
07_03_1705 + 28848293-28848321,28848766-28848841,28848940-288490...    27   9.7  

>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 491 EIPIPPYQFLIHESTIIKAGNVTFGQLLVNQKNELLTLYSIGSHK 625
           E+P P    LI  ST+ K     FG++L +  N  + LY +   K
Sbjct: 374 EVPHPWLNLLIPRSTVHKFAKEVFGKILKDSNNGPILLYPVNRTK 418


>07_03_1705 +
           28848293-28848321,28848766-28848841,28848940-28849082,
           28849297-28849383,28849492-28849575,28850224-28850380,
           28850521-28850606,28850995-28851226,28851351-28851471,
           28851610-28851746,28852086-28852202,28852612-28852660,
           28852751-28852793,28852945-28853116,28853192-28853262,
           28853365-28853458,28853608-28853820,28853851-28853859,
           28853895-28853999,28854266-28854586,28854664-28854789
          Length = 823

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 135 TFLLLYCLVLCGRAHGLPGPIDI 203
           +FLLL C+  CG   GL  PID+
Sbjct: 357 SFLLLSCIKSCGGRWGLNLPIDV 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,392
Number of Sequences: 37544
Number of extensions: 327257
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)