Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0703
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_8369| Best HMM Match : CENP-B_N (HMM E-Value=1.6)                   29   2.4  
SB_55459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)                 28   5.7  
SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 183 THELVHTKLSNTKVKKCNLIFLSISSHWNLLYGGKEVCLPFTILIKLELQ 34
           TH+ +  K S+  +K+CN    S+     +L G  EVC   T L K +LQ
Sbjct: 488 THKHLTIKQSDFAIKQCNTAIRSLEQCLEILRGEVEVCRKQTELAKYKLQ 537


>SB_8369| Best HMM Match : CENP-B_N (HMM E-Value=1.6)
          Length = 427

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 225 GGWLLHC*CLWA--PVTHELVHTKLSNTKVKKCN 130
           G W+L C  LW   PV H ++ +KLS++  + CN
Sbjct: 67  GTWIL-CYILWYLDPVLHTMIFSKLSHSDERLCN 99


>SB_55459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +2

Query: 125 IKLHFFTFVLLSFVWTSSWVTGAHRHQQCNSH 220
           +K+ +FT  +  + W   W+     + +C SH
Sbjct: 26  MKVQYFTLRMYGYAWIGEWMNWVQENCRCESH 57


>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 461 LFIEHFLNKPEIPIPPYQFLIHESTIIKAGNVTFGQLLVN---QKNELLTLYSIGSHKTL 631
           + + + +NK  + I   + LI+ES ++   +V   ++LVN    K+ +L   S+   + L
Sbjct: 411 VLVNNTVNKSRVLINESRVLINESRVLGNNSVNKSRVLVNNSVNKSRVLVNNSVNESRVL 470

Query: 632 LND 640
           +N+
Sbjct: 471 VNN 473


>SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 157 KQYKSKKVQFNIFKHQLSLESIVWR-ERGL 71
           KQ K K   +NIFKH LS    + R + GL
Sbjct: 241 KQTKQKSKDYNIFKHALSCNGFLSRPDEGL 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,279
Number of Sequences: 59808
Number of extensions: 378424
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)