Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0703
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-2|CAA82581.1|  648|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z29443-1|CAA82576.1|  649|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z29443-2|CAA82581.1|  648|Caenorhabditis elegans Hypothetical
           protein T07C4.3b protein.
          Length = 648

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 162 KLSNTKVKKCNLIFLSISSHWNLLYGGKEVCLPFTILIKLELQI*TPFPRAE 7
           K  + + +  N+IF S S+H +++  GKE    F    +   ++ TP P  E
Sbjct: 386 KEEHAETEVTNVIFRSTSTHSSIIANGKEQLAEFVAEQEARQKVTTPNPVKE 437


>Z29443-1|CAA82576.1|  649|Caenorhabditis elegans Hypothetical
           protein T07C4.3a protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 162 KLSNTKVKKCNLIFLSISSHWNLLYGGKEVCLPFTILIKLELQI*TPFPRAE 7
           K  + + +  N+IF S S+H +++  GKE    F    +   ++ TP P  E
Sbjct: 387 KEEHAETEVTNVIFRSTSTHSSIIANGKEQLAEFVAEQEARQKVTTPNPVKE 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,479
Number of Sequences: 27780
Number of extensions: 308896
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)