Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0702
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.76 
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.1  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRP 598
           PP PP   G G PPP P
Sbjct: 764 PPPPPGVAGAGPPPPPP 780


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 407 PVSKLVLPTLRVAAYRSVAHGAQALLP 327
           PVSK   P+L V AY   A G   +LP
Sbjct: 99  PVSKQAHPSLAVKAYHRPAAGKGPILP 125


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 649 PPAPPTNLRNRRTPSASS 596
           PP PPTN   R T ++SS
Sbjct: 282 PPRPPTNASTRSTGTSSS 299


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 583 CTSCLRTRRGCACSASSWGARG 648
           C   ++T R   C+A SWG  G
Sbjct: 134 CRKSMQTNRLPGCTAESWGYHG 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,375
Number of Sequences: 5004
Number of extensions: 49364
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)