Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0702
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 30 1.9
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8) 29 3.3
SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5) 29 4.3
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95) 29 4.3
SB_49608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 28 7.5
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 7.5
SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 27 9.9
SB_45501| Best HMM Match : Zona_pellucida (HMM E-Value=3.5e-25) 27 9.9
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 649 PPAPPTNLRNRRTPSASSSNSC 584
PP PP N TPS +SS+ C
Sbjct: 287 PPLPPKNTNRASTPSCTSSSEC 308
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 648 PPRPPRTCGTGAPPP 604
PP+PPRT G PPP
Sbjct: 647 PPKPPRTLPQGVPPP 661
>SB_31683| Best HMM Match : ApoC-I (HMM E-Value=1.8)
Length = 804
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 619 RRTPSASSSNSCRLRAQRM*GGEAGDRA 536
++TPSA+ +N CRLRA R A D+A
Sbjct: 668 KQTPSANMTNLCRLRALRALFAIAADQA 695
>SB_52287| Best HMM Match : Myb_DNA-binding (HMM E-Value=4.5)
Length = 529
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 327 WEKGLCAMS--HTPVGGHPQGWEHKLADRSSLPQASGEEKSKSQSKHVFAQPHFSKVSMA 500
W K MS H + G E+ RS+ +A+ E S+ Q K A+ +F +V +
Sbjct: 281 WTKAFYIMSAVHRQRNEYALGQEYMT--RSTEERAATEGISEDQMKQ--AEQYFEQVELL 336
Query: 501 WREQTE 518
W+EQ E
Sbjct: 337 WKEQKE 342
>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
Length = 1656
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 372 HPQGWEHKLADRSSLPQASGEEKSKSQSKH 461
H + + ADR PQ SG++KS Q K+
Sbjct: 427 HENAHDKEQADRQDKPQFSGQDKSSEQHKN 456
>SB_49608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = -1
Query: 205 RRLTSSLTPEFRSIPRVRYNF--THKTFNFE-IIVQALNNKTTPSTALL 68
+RL S++T +S+ + + THKTF+FE ++V+ L+ K T +
Sbjct: 104 KRLGSTITTSSQSVSQAQRLIPATHKTFSFEGLVVEDLDLKVLAGTPFM 152
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 370 PPTGVWLMAHRPFSHPHAAWRDT 302
PPT W + R S+P + W+DT
Sbjct: 399 PPTQAWGLGSRMQSYPTSIWQDT 421
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 648 PPRPPRTCGTGAPPPRP 598
PP PP GT PPP P
Sbjct: 315 PPPPPARMGTAPPPPPP 331
>SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 567 RWARSLHELLEDAEGVRLFRKFV 635
RWA SL ELL+D G + F +F+
Sbjct: 203 RWAFSLSELLKDPLGRKYFTRFL 225
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 308 SPCSVRVGEGPVRHEPHSCRRPPARLGAQAC 400
+PCSV G G + C PP LG + C
Sbjct: 792 TPCSVTCGVG-IMERNRFCTNPPPALGGRDC 821
>SB_45501| Best HMM Match : Zona_pellucida (HMM E-Value=3.5e-25)
Length = 341
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 140 CEVVTNSRNTSEFRCQRGC*PPL--FRHHSARI 232
C ++ N S+ RCQRGC P+ RH A I
Sbjct: 191 CFLMVCHTNASDSRCQRGCAQPIRARRHIEAEI 223
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 245 SKSSSKTRNNAAALSCYTGSVSPCSVRVGEGP 340
++ SS RN+A + S YT P SVR G P
Sbjct: 15 ARDSSLIRNSAGSQSTYTLLYEPVSVRRGSHP 46
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 649 PPAPPTNLRNRRTPSASSSNSCRLRAQRM*GGEAGDRAELPDDPSVCSR 503
PP PP + R+ S SS S L++ G + AE P P V +
Sbjct: 810 PPPPPVARKPSRSNSTSSQRSLELQSPSREEGPSLITAEPPPPPPVARK 858
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,745
Number of Sequences: 59808
Number of extensions: 436528
Number of successful extensions: 1607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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