Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0702
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    28   5.0  
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    28   6.6  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQA 592
           PP PPRTC    PPP P A
Sbjct: 125 PPNPPRTC---CPPPTPAA 140


>Z70312-3|CAA94385.1|  172|Caenorhabditis elegans Hypothetical
           protein ZC168.5 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 648 PPRPPRTCGTG--APPPRPQATRA 583
           PP PP  CG G  APPP P  + A
Sbjct: 40  PPPPPPPCGGGYEAPPPPPPPSYA 63


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRAD 580
           PP PP+  GTG+PPP P     D
Sbjct: 127 PPPPPK--GTGSPPPPPTGEPQD 147



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRAD 580
           PP PP+  GTG+PPP P     D
Sbjct: 158 PPPPPK--GTGSPPPPPTGEPQD 178



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRAD 580
           PP PP+  GTG+PPP P     D
Sbjct: 251 PPPPPK--GTGSPPPPPTGEPQD 271



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRAD 580
           PP PP+  GTG PPP P     D
Sbjct: 33  PPPPPK--GTGTPPPPPTGEPQD 53



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRAD 580
           PP PP+  GTG PPP P     D
Sbjct: 96  PPPPPK--GTGTPPPPPTGEPQD 116


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 98  IKCLNYYFKIKSFVCEVVTNSRN 166
           I+CLN + K K FVC    N  N
Sbjct: 8   IQCLNKFSKYKKFVCHTTCNCPN 30


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 200 PPLFRHHSARI*ENASKSSSKTRNNAAALSCYTGSVSPCSVRVGEGPVRHEPHSCRRPPA 379
           PP  R     I    S  ++ T  +A +     GSV P  + +   PV+  P + R  P 
Sbjct: 646 PPANRRSQVGILSATSSKATVTVTSATSPPYPKGSVGPTVISIKPAPVQQAPMAPRAAPT 705

Query: 380 RL 385
           ++
Sbjct: 706 KV 707


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = -2

Query: 642 RPPRTCGTGAPPPRPQATRA 583
           RPP   G G PPP PQA RA
Sbjct: 516 RPPG--GPGGPPPGPQAMRA 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,772,493
Number of Sequences: 27780
Number of extensions: 319101
Number of successful extensions: 1250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)