Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0702
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   29   3.5  
At1g43650.1 68414.m05011 integral membrane family protein / nodu...    29   3.5  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    28   6.1  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    28   6.1  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    28   6.1  
At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family...    28   6.1  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    27   8.1  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRA 583
           PP PP T     PPP P  T+A
Sbjct: 539 PPPPPGTAAAPPPPPPPPGTQA 560



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATRA 583
           PP PPR      PPP P  T A
Sbjct: 526 PPPPPRAAVAPPPPPPPPGTAA 547


>At1g43650.1 68414.m05011 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 343

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 473 TAFLQGQHGVARADGGVVGQLGAV 544
           T  L+  HGVA+  G +VG LGA+
Sbjct: 122 TVTLKKSHGVAKVTGSMVGMLGAL 145


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 645 PRPPRTCGTGAPPPRPQA 592
           P PP T     PPPRPQA
Sbjct: 169 PPPPPTITRSPPPPRPQA 186


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1167

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 242  ASKSSSKTRNNAAALSCYTGSVSPCSVRVGEGPVRHEPHS 361
            +S  S+ TRN ++  +  +GSVS  ++R  +  + HE  S
Sbjct: 1122 SSSDSTPTRNGSSNTTTSSGSVSTNTIREEDSNILHEAQS 1161


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRPQATR 586
           PP PP   G G PPP P + +
Sbjct: 410 PPPPPGKKGAGPPPPPPMSKK 430


>At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family
           contains similarity to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353; contains Pfam
           profile PF02297: Cytochrome oxidase c subunit VIb
          Length = 134

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 645 PRPPRTCGTGAPPPRPQAT 589
           PRP  T GT +PPP  +AT
Sbjct: 27  PRPAHTPGTVSPPPENEAT 45


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 648 PPRPPRTCGTGAPPPRP 598
           PP PP +   GAPPP P
Sbjct: 702 PPLPPSSTRLGAPPPPP 718


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,784
Number of Sequences: 28952
Number of extensions: 294028
Number of successful extensions: 1123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)