Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0701
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    27   2.1  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    26   3.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   4.8  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   6.3  

>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 510 TKASITDSKKYLNLNPCLTHSHE 442
           T AS   S  YL  NP LTHS++
Sbjct: 232 TNASSLQSSNYLPTNPTLTHSNK 254


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 207 TILEHSCFFCEKHTDLKLRYLVPGNKL-GTRIIIF 106
           T+++   FF  KH D  L YLV  N+L G  IIIF
Sbjct: 259 TLIQRYLFFPFKHKDTYLVYLV--NELAGNSIIIF 291


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 TYHNIGNYEFIGFILNYL 403
           T+H  G Y F+G+  NYL
Sbjct: 636 TFHYAGIYPFLGWFFNYL 653


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 94  HTTISHSLQLTSHVFQYEVLMSQD 23
           H+  +HSL +++H F+   LMS++
Sbjct: 298 HSLDTHSLDISTHTFKLPPLMSKE 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,329
Number of Sequences: 5004
Number of extensions: 44378
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)