Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0701
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)                  28   4.9  
SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)                   27   8.6  

>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
          Length = 292

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 127 GYSDNYILIKKHTTISHSLQLTSHVFQ 47
           GYS N IL+ K+ +++   +LT H F+
Sbjct: 218 GYSQNQILVWKYPSLTQVAKLTGHSFR 244


>SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 261 ICALLMILLFDVIILIFTTILEHSCFFCEK 172
           I  +++I++  +II+I   I+  SC+ C+K
Sbjct: 129 IIIIIIIIIIIIIIIIIIIIIILSCYICKK 158


>SB_16396| Best HMM Match : 7tm_1 (HMM E-Value=0.017)
          Length = 274

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 374 EFIGFILNYLKCCLH*PIFIAEVSCEC 454
           +F   I NY+ CC H    +A VS EC
Sbjct: 176 QFNAVISNYVYCCCHCRKRVATVSLEC 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,568
Number of Sequences: 59808
Number of extensions: 292761
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)