Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0701
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08890.1 68414.m00989 sugar transporter family protein simila...    29   3.1  
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ...    28   4.1  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    27   7.1  
At1g19100.1 68414.m02376 ATP-binding region, ATPase-like domain-...    27   7.1  

>At1g08890.1 68414.m00989 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 464

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 359 NIGNYEFIGFILNYLKCCLH*PIFIAEVSCECVRHGFRF-KYFFESVMLALVFNSG 523
           NIG   F+GF +  +   +  P++IAE++ +  R GF F     +S  ++L+F +G
Sbjct: 121 NIGR-GFLGFGVGLISYVV--PVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTG 173


>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to fizzy-related
           protein (GI:5813825) Drosophila melanogaster,
           PID:g2326419;
          Length = 518

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 127 GYSDNYILIKKHTTISHSLQLTSHVFQ 47
           GYS N I++ K+ T+S    LT H ++
Sbjct: 441 GYSQNQIIVWKYPTMSKIATLTGHTYR 467


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 127 GYSDNYILIKKHTTISHSLQLTSHVFQ 47
           GYS N I++ K+ T+S    LT H ++
Sbjct: 398 GYSQNQIIVWKYPTMSKLATLTGHSYR 424


>At1g19100.1 68414.m02376 ATP-binding region, ATPase-like
           domain-containing protein-related low similarity to
           microrchidia [Homo sapiens] GI:5410257; contains
           non-consensus splice site (GC) at intron 8
          Length = 663

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 519 ELKTKASITDSKKYLNLNPCLTHSHETS 436
           EL +K+   + K YL+++P   HS+ TS
Sbjct: 98  ELSSKSQQPNGKNYLHVHPMFLHSNATS 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,233,011
Number of Sequences: 28952
Number of extensions: 207596
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)