Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0700
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    33   0.090
At5g17300.1 68418.m02026 myb family transcription factor similar...    28   4.5  
At5g13390.1 68418.m01542 expressed protein                             28   4.5  
At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin ...    27   7.8  
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z...    27   7.8  
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z...    27   7.8  

>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 33.5 bits (73), Expect = 0.090
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 445 SANHRMAYRNTQYVHNYEIILYRFQCRRCSLDSNGPNSCTSPCSMADIRKANTCT 281
           S  H   Y+N + +  YE  L  FQC    L   G  +C + C    + ++ TCT
Sbjct: 405 STKHDDRYKNLKMLFPYEEFLKFFQCEVFDLSPRGLVNCGNSCYANAVLQSLTCT 459


>At5g17300.1 68418.m02026 myb family transcription factor similar to
           CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
           profile PF00249: Myb-like DNA-binding domain
          Length = 387

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 361 CSLDSNGPNSCTSPCSMADIRKANTCT 281
           CSLDS+ PN   SP S A    A T T
Sbjct: 171 CSLDSSSPNRSLSPVSSASPPAALTTT 197


>At5g13390.1 68418.m01542 expressed protein 
          Length = 1123

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +1

Query: 403 ERIAYSCMPFDDLHLYSFVFIFHIHMINLKFGLMLYSSVEY 525
           ER+ ++C+PF     +++  I  + M N  +  +L++ V Y
Sbjct: 177 ERLLFACVPFTASSFFAWATISAVGMNNSSYYFLLFACVFY 217


>At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin
           family protein very low similarity to Ser Thr protein
           kinase GI:2598067 from (Zea mays); contains Pfam lectin
           (probable mannose binding) domain PF01453
          Length = 919

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 168 SRSRSSTGNLSIVPRVGHDQNHDQSQHEDSHHRTDPVFVHVFALRMSAILHGLVHEFGPL 347
           S S SST + S   + G     D    ED   R    F+ +  LR  +    ++H+   +
Sbjct: 365 SSSSSSTKSYSKTDKPGRSNGGDA---EDGGLRWFLPFIALCYLRYMSATSNIIHDCDEV 421

Query: 348 LSKLQRLHWNLYK 386
            +  + LH+ LYK
Sbjct: 422 FNYWEPLHYILYK 434


>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 312

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 216 GHDQNHDQSQHEDSHH 263
           GH  N+D   H+D HH
Sbjct: 61  GHGNNYDHHHHQDPHH 76


>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 312

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 216 GHDQNHDQSQHEDSHH 263
           GH  N+D   H+D HH
Sbjct: 61  GHGNNYDHHHHQDPHH 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,255,567
Number of Sequences: 28952
Number of extensions: 225382
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)