Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0698
(565 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 191 1e-47
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 177 2e-43
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 175 4e-43
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 161 1e-38
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 156 3e-37
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 156 3e-37
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 154 2e-36
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 152 6e-36
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 150 2e-35
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 145 5e-34
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 137 1e-31
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 137 2e-31
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 137 2e-31
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 137 2e-31
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 132 4e-30
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 131 1e-29
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 126 4e-28
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 126 4e-28
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 124 1e-27
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 121 1e-26
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 118 7e-26
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 115 9e-25
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 113 3e-24
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 108 8e-23
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 108 8e-23
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 108 8e-23
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 108 8e-23
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 108 8e-23
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 107 1e-22
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 98 1e-19
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 98 1e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 97 3e-19
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 95 1e-18
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 88 1e-16
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 85 1e-15
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 83 4e-15
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 83 6e-15
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 3e-14
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 79 9e-14
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 75 2e-12
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 74 3e-12
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 66 4e-10
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 9e-10
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 65 1e-09
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 64 2e-09
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 61 2e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 59 6e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 6e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 6e-08
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 58 1e-07
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 57 2e-07
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 57 3e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 57 3e-07
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 56 4e-07
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 56 4e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 56 6e-07
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 56 8e-07
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 56 8e-07
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 53 4e-06
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 53 4e-06
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 53 4e-06
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 52 7e-06
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 52 7e-06
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 51 2e-05
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 50 4e-05
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 48 2e-04
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 47 3e-04
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 47 3e-04
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 46 6e-04
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 46 6e-04
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 45 0.001
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 45 0.001
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 44 0.002
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 43 0.004
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 42 0.008
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 42 0.013
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 42 0.013
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 41 0.017
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 41 0.017
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 41 0.023
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 40 0.030
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 40 0.030
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 40 0.053
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 39 0.070
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 38 0.16
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 38 0.21
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 37 0.37
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 36 0.65
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 34 2.0
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 33 4.6
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 33 4.6
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 6.1
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 8.1
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 191 bits (465), Expect = 1e-47
Identities = 107/188 (56%), Positives = 112/188 (59%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 9 HKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVM 68
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPP
Sbjct: 69 PIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPP 128
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV AVGIT
Sbjct: 129 LSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGIT 188
Query: 542 AFLLLLSL 565
AFLLLLSL
Sbjct: 189 AFLLLLSL 196
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 177 bits (430), Expect = 2e-43
Identities = 99/183 (54%), Positives = 116/183 (63%)
Frame = -2
Query: 564 SDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLP 385
S++N+K AV T TN G S I +R I+E PAKC+EKI STD P
Sbjct: 36 SESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAP 95
Query: 384 LCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQF 205
CAI SGG TVHPVP P STI L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQF
Sbjct: 96 ACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQF 155
Query: 204 PNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFPNSARIKSLKDVPIIPDQIPKIK 25
PNPP KA AVT+ L I S PI PG PNSARIKSL DVP +P PK+K
Sbjct: 156 PNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
Query: 24 YNV 16
YNV
Sbjct: 215 YNV 217
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 175 bits (427), Expect = 4e-43
Identities = 95/160 (59%), Positives = 102/160 (63%)
Frame = +2
Query: 86 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 265
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 266 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 445
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 446 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
SFDQ+PLF+ AVGITA LLLLSL
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSL 172
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 161 bits (391), Expect = 1e-38
Identities = 94/188 (50%), Positives = 104/188 (55%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 13 HKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVM 72
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ N+AH G SVDLAIFSLHLAGISS S Q PLFV +V IT
Sbjct: 133 LAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLIT 192
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 193 AVLLLLSL 200
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 156 bits (379), Expect = 3e-37
Identities = 90/188 (47%), Positives = 101/188 (53%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 181 AVLLLLSL 188
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 156 bits (379), Expect = 3e-37
Identities = 90/188 (47%), Positives = 101/188 (53%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ N+AH G SVDL IFSLHLAG+SS S Q PLFV AV +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVT 191
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 192 AVLLLLSL 199
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 154 bits (373), Expect = 2e-36
Identities = 88/188 (46%), Positives = 101/188 (53%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ N+AH G SVDL IFSLHLAG+SS + Q PLFV +V +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVT 191
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 192 AVLLLLSL 199
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 152 bits (368), Expect = 6e-36
Identities = 87/188 (46%), Positives = 101/188 (53%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 12 HKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVM 71
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPP
Sbjct: 72 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPP 131
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ N +H G SVDL IFSLHLAG+SS + Q PLFV +V IT
Sbjct: 132 LAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLIT 191
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 192 AVLLLLSL 199
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 150 bits (364), Expect = 2e-35
Identities = 84/188 (44%), Positives = 101/188 (53%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 13 HKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVM 72
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPP
Sbjct: 73 PTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPP 132
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+S AH G SVD+AIFSLHLAG+SS + ++PLFV +V IT
Sbjct: 133 LASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLIT 192
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 193 AILLLLSL 200
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 145 bits (352), Expect = 5e-34
Identities = 80/160 (50%), Positives = 92/160 (57%)
Frame = +2
Query: 86 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 265
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 266 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 445
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 446 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ + LFV +V ITA LLLLSL
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSL 182
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 137 bits (332), Expect = 1e-31
Identities = 79/190 (41%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 175
HKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 13 HKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFM 72
Query: 176 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 355
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVY
Sbjct: 73 VMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVY 132
Query: 356 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 535
PPLS +H G +VDLAIFSLHL+G+SS + +LPLFV +V
Sbjct: 133 PPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVL 192
Query: 536 ITAFLLLLSL 565
+TAFLLLLSL
Sbjct: 193 VTAFLLLLSL 202
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 137 bits (331), Expect = 2e-31
Identities = 83/189 (43%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 539 TAFLLLLSL 565
TA LLLLSL
Sbjct: 191 TAILLLLSL 199
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 137 bits (331), Expect = 2e-31
Identities = 83/189 (43%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 539 TAFLLLLSL 565
TA LLLLSL
Sbjct: 191 TAILLLLSL 199
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 137 bits (331), Expect = 2e-31
Identities = 83/189 (43%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 539 TAFLLLLSL 565
TA LLLLSL
Sbjct: 191 TAILLLLSL 199
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 132 bits (320), Expect = 4e-30
Identities = 76/190 (40%), Positives = 99/190 (52%), Gaps = 2/190 (1%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 175
HKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 18 HKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFM 77
Query: 176 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 355
N LVP+++G+PD+AFPR+NNI F +VE G GTG TVY
Sbjct: 78 VMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVY 137
Query: 356 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 535
PPLSS +H G +VDLAIFSLH++G SS S ++PLFV ++
Sbjct: 138 PPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSIL 197
Query: 536 ITAFLLLLSL 565
+TAFLLLL++
Sbjct: 198 VTAFLLLLAV 207
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 131 bits (316), Expect = 1e-29
Identities = 73/160 (45%), Positives = 89/160 (55%)
Frame = +2
Query: 86 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 265
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 266 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 445
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 446 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ D++ LF +V ITA LLLLSL
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSL 183
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 126 bits (304), Expect = 4e-28
Identities = 79/189 (41%), Positives = 93/189 (49%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 539 TAFLLLLSL 565
TAFLLLLSL
Sbjct: 192 TAFLLLLSL 200
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 126 bits (304), Expect = 4e-28
Identities = 79/189 (41%), Positives = 93/189 (49%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 539 TAFLLLLSL 565
TAFLLLLSL
Sbjct: 192 TAFLLLLSL 200
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 124 bits (299), Expect = 1e-27
Identities = 77/189 (40%), Positives = 94/189 (49%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 12 KDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLA 71
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLSS AH G SVDLAIFSLHL ISS S ++PLFV A+ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFI 191
Query: 539 TAFLLLLSL 565
TAFLLLLSL
Sbjct: 192 TAFLLLLSL 200
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 121 bits (292), Expect = 1e-26
Identities = 76/188 (40%), Positives = 89/188 (47%), Gaps = 1/188 (0%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 181
KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPP 132
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LS +H G SVDLAIF LHL+GISS +L LF AV IT
Sbjct: 133 LSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVIT 192
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 193 AVLLLLSL 200
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 118 bits (285), Expect = 7e-26
Identities = 74/189 (39%), Positives = 92/189 (48%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PL+S AH G SVDLAIF+LH+ ISS + +LPLFV A+ I
Sbjct: 132 PLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILI 191
Query: 539 TAFLLLLSL 565
TA LLLL+L
Sbjct: 192 TAVLLLLTL 200
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 115 bits (276), Expect = 9e-25
Identities = 69/188 (36%), Positives = 87/188 (46%), Gaps = 1/188 (0%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 181
KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPP
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPP 158
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LS +H VDL IF LHL+GISS +L LF AV IT
Sbjct: 159 LSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVIT 218
Query: 542 AFLLLLSL 565
A LLLLSL
Sbjct: 219 AVLLLLSL 226
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 113 bits (272), Expect = 3e-24
Identities = 73/189 (38%), Positives = 89/189 (47%), Gaps = 2/189 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYF 136
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PL+ +H G +VDLAIFSLHL+G SS ++ +PLF AV
Sbjct: 137 PLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLF 196
Query: 539 TAFLLLLSL 565
TA LLLLSL
Sbjct: 197 TAILLLLSL 205
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 108 bits (260), Expect = 8e-23
Identities = 62/150 (41%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 181
KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV--- 352
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 353 -YPPLSSNIAHRGRSVDLAIFSLHLAGISS 439
YPPLS +H G SVDLAIF+LHL+G+SS
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSS 190
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 108 bits (260), Expect = 8e-23
Identities = 58/157 (36%), Positives = 85/157 (54%)
Frame = +2
Query: 95 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 274
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 275 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 454
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 455 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ +LPLFV +V ITA L++L+L
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 108 bits (260), Expect = 8e-23
Identities = 58/157 (36%), Positives = 85/157 (54%)
Frame = +2
Query: 95 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 274
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 275 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 454
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 455 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ +LPLFV +V ITA L++L+L
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 108 bits (260), Expect = 8e-23
Identities = 58/157 (36%), Positives = 85/157 (54%)
Frame = +2
Query: 95 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 274
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 275 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 454
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 455 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ +LPLFV +V ITA L++L+L
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 108 bits (260), Expect = 8e-23
Identities = 58/157 (36%), Positives = 85/157 (54%)
Frame = +2
Query: 95 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 274
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 275 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 454
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 455 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ +LPLFV +V ITA L++L+L
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 107 bits (258), Expect = 1e-22
Identities = 66/190 (34%), Positives = 82/190 (43%), Gaps = 2/190 (1%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 175
HK IG LY EL PG L G+ YN I T H
Sbjct: 14 HKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVV 73
Query: 176 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 355
N VP+++GAPD++FPR+NN F E G GTG TVY
Sbjct: 74 VMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVY 133
Query: 356 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 535
PPLSS +H G SVDL IFS HL GI S LPLFV +V
Sbjct: 134 PPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVA 193
Query: 536 ITAFLLLLSL 565
+T+FL+++++
Sbjct: 194 VTSFLVIVAI 203
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 98.3 bits (234), Expect = 1e-19
Identities = 59/115 (51%), Positives = 66/115 (57%)
Frame = +2
Query: 221 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 400
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 401 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
LAIFSLH+AG+ S + ++PLFV AV ITA LLLLSL
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSL 118
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 97.9 bits (233), Expect = 1e-19
Identities = 74/208 (35%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY---N 133
HKDIGTLY AEL PG + D DQ Y N
Sbjct: 36 HKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWN 95
Query: 134 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXX 313
++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 96 VLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGS 155
Query: 314 XIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 481
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 156 TFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNM 214
Query: 482 XXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ ++PLFV +V +TAFLLLL+L
Sbjct: 215 RAPGMTLHKMPLFVWSVLVTAFLLLLAL 242
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 96.7 bits (230), Expect = 3e-19
Identities = 56/122 (45%), Positives = 64/122 (52%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 13 HKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXM 72
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 362 LS 367
L+
Sbjct: 133 LA 134
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 94.7 bits (225), Expect = 1e-18
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = +2
Query: 83 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 256
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 257 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 436
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 437 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
S + ++PLF +V +TA+LLLLSL
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSL 305
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 88.2 bits (209), Expect = 1e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = +2
Query: 86 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 265
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 266 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 439
+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 85.0 bits (201), Expect = 1e-15
Identities = 55/190 (28%), Positives = 77/190 (40%), Gaps = 2/190 (1%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 175
HK IGT Y EL +PG G Q+YN+++T H
Sbjct: 21 HKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFL 80
Query: 176 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 355
N ++PL+LGAP++AFPR+N + F + G G+ T Y
Sbjct: 81 VMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFY 140
Query: 356 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 535
PPLS S+D I LH GI S + DQ+ +FV
Sbjct: 141 PPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSY 199
Query: 536 ITAFLLLLSL 565
+T+FLL+LS+
Sbjct: 200 LTSFLLVLSV 209
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 83.0 bits (196), Expect = 4e-15
Identities = 48/155 (30%), Positives = 67/155 (43%)
Frame = +2
Query: 101 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 280
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 281 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 460
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 461 XXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
SF LF+ A ITA LL+++L
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITL 202
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 82.6 bits (195), Expect = 6e-15
Identities = 45/146 (30%), Positives = 67/146 (45%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 14 HKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVM 73
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N +PL++ D++ PR+NN+ + G G G T+YPP
Sbjct: 74 PTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPP 133
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISS 439
LS++ G +DLA+FSLH+AG+SS
Sbjct: 134 LSNSEFMDGLPIDLAVFSLHMAGMSS 159
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +2
Query: 221 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 400
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 401 LAIFS 415
LAI+S
Sbjct: 61 LAIYS 65
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 78.6 bits (185), Expect = 9e-14
Identities = 50/126 (39%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKC 130
Query: 359 PLSSNI 376
LS I
Sbjct: 131 KLSQII 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 74.5 bits (175), Expect = 2e-12
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 175
HKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 14 HKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFM 73
Query: 176 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 352
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 74 VMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 73.7 bits (173), Expect = 3e-12
Identities = 63/147 (42%), Positives = 72/147 (48%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 178
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISS 439
P SS +AH +VDL IF LHLAGISS
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISS 147
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 66.5 bits (155), Expect = 4e-10
Identities = 43/148 (29%), Positives = 66/148 (44%)
Frame = +2
Query: 122 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 301
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 302 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 481
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 482 XXXXXSFDQLPLFV*AVGITAFLLLLSL 565
D++ ++ +T+FLLLLSL
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSL 205
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 9e-10
Identities = 44/126 (34%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKK 136
Query: 359 PLSSNI 376
SS +
Sbjct: 137 ICSSKM 142
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 64.9 bits (151), Expect = 1e-09
Identities = 35/69 (50%), Positives = 43/69 (62%)
Frame = +2
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 539 TAFLLLLSL 565
T LLLLSL
Sbjct: 132 TTVLLLLSL 140
Score = 35.1 bits (77), Expect = 1.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 193 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 318
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 64.1 bits (149), Expect = 2e-09
Identities = 51/154 (33%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIG LY EL +PG + + YN+++T+H
Sbjct: 94 HKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFAT 153
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRF--XXXXXXXXXXXXXXIVE-NGAGTG*TV 352
N L+PL++GA D+AFPRIN I F I E A TG T+
Sbjct: 154 PIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTM 212
Query: 353 YPPLS-----SNIAHRGRSVDLAIFSLHLAGISS 439
Y PLS N A+ G VDL + LHL+G+S+
Sbjct: 213 YTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSA 244
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +2
Query: 125 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 304
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 305 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISS 439
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVAS 163
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 59.3 bits (137), Expect = 6e-08
Identities = 48/187 (25%), Positives = 71/187 (37%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG ++ EL PG I D YN + T H
Sbjct: 35 HKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMI 94
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L+P+++GA D+AFP++N + F +V+ GA TG T Y P
Sbjct: 95 PAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF-YVYLAGAVVALFGMVQGGADTGWTFYTP 153
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
S+ + V L F L G SS + +LPLFV ++ T
Sbjct: 154 YSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYAT 210
Query: 542 AFLLLLS 562
+ + +L+
Sbjct: 211 SVIQILA 217
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 6e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 317 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 439
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 59.3 bits (137), Expect = 6e-08
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +2
Query: 5 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 178
KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 352
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 58.0 bits (134), Expect = 1e-07
Identities = 47/187 (25%), Positives = 69/187 (36%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG ++ EL PG I D YN T H
Sbjct: 42 HKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMI 101
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N ++PL+LGA D+AFPR+N + ++ G TG T Y P
Sbjct: 102 PAIPAVFGNFMLPLMLGAKDVAFPRLNLLSL-YIYLAGAVLALWGMLNGGLDTGWTFYTP 160
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
S AH +V +F + G SS ++ ++PLFV A+ T
Sbjct: 161 YS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYAT 217
Query: 542 AFLLLLS 562
+ + +L+
Sbjct: 218 SCIQVLA 224
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 57.2 bits (132), Expect = 2e-07
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 1/142 (0%)
Frame = +2
Query: 128 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 307
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 308 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 484
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 485 XXXXSFDQLPLFV*AVGITAFL 550
++ +LPL + + +TA L
Sbjct: 206 APGMTYMRLPLTIWGLWLTAIL 227
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 56.8 bits (131), Expect = 3e-07
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 6/194 (3%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXXXXX 169
HK IG LY EL G I + IYN +T H
Sbjct: 18 HKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLF 77
Query: 170 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXI-VENGAGTG* 346
N L+P+++G +++ PR+N I F + + +G
Sbjct: 78 VFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGW 137
Query: 347 TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 523
T+YPPLS+ A G ++DL++ +H+ GISS +F + ++
Sbjct: 138 TLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYN 197
Query: 524 *AVGITAFLLLLSL 565
++ +T+ LL+ SL
Sbjct: 198 FSIIVTSILLIGSL 211
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 56.8 bits (131), Expect = 3e-07
Identities = 42/187 (22%), Positives = 66/187 (35%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK +G +Y A+L P + D YN I T H
Sbjct: 53 HKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAM 112
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N +VPL +GA D+AFP +NN+ F ++ G T Y P
Sbjct: 113 PFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMP 171
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+SN G + + L +AGI + + ++P+F IT
Sbjct: 172 LASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLIT 231
Query: 542 AFLLLLS 562
+++ +
Sbjct: 232 MVIIVFA 238
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 56.4 bits (130), Expect = 4e-07
Identities = 45/188 (23%), Positives = 68/188 (36%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG +Y +L P + +++N + T H
Sbjct: 32 HKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGM 91
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N VPL++GA D+AFPR+N+ F + + G Y P
Sbjct: 92 PVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVP 150
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LSS + VD I L + GI S S ++PLFV + +
Sbjct: 151 LSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQ 210
Query: 542 AFLLLLSL 565
A L++L+L
Sbjct: 211 AILIILAL 218
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 56.4 bits (130), Expect = 4e-07
Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 1/186 (0%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIG LY +L P S Y VT H
Sbjct: 21 HKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFAS 80
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYP 358
N +VPL +GA D+AFPR+N + + E+GA G T+Y
Sbjct: 81 PFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYA 139
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PL++ I G +DLA ++ L +S + ++P+F ++
Sbjct: 140 PLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILF 199
Query: 539 TAFLLL 556
T L+L
Sbjct: 200 TVILML 205
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 56.0 bits (129), Expect = 6e-07
Identities = 45/187 (24%), Positives = 67/187 (35%), Gaps = 1/187 (0%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK +G +Y AEL PG ++ +N + T H
Sbjct: 38 HKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGT 97
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYP 358
N ++PL +GAPD+AFPR+N F + GA G T+Y
Sbjct: 98 PIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYS 156
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLS I G D+ I + GI S + ++P+F + +
Sbjct: 157 PLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFV 216
Query: 539 TAFLLLL 559
+ L LL
Sbjct: 217 VSVLALL 223
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 55.6 bits (128), Expect = 8e-07
Identities = 43/146 (29%), Positives = 57/146 (39%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
H D+ LY +L P L D +YN VT H
Sbjct: 9 HIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAM 66
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L+P PD+ FPR+N + F ++ + A G T YPP
Sbjct: 67 PTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPP 121
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISS 439
LSS SV+ ++FSLHLAGI+S
Sbjct: 122 LSS----LSPSVEFSVFSLHLAGIAS 143
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 55.6 bits (128), Expect = 8e-07
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 2/148 (1%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIG LY EL + +YN ++T+H
Sbjct: 68 HKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGT 127
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVY 355
N +PL++ A D+AFPRIN I F ++ A T T+Y
Sbjct: 128 PMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMY 186
Query: 356 PPLSSNIAHRGRSVDLAIFSLHLAGISS 439
PLS ++ +VD+ + LHL G+S+
Sbjct: 187 TPLSLQMS--SPAVDMMMLGLHLTGVSA 212
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 53.2 bits (122), Expect = 4e-06
Identities = 35/114 (30%), Positives = 49/114 (42%)
Frame = +2
Query: 98 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 277
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 278 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 439
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASS 113
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 53.2 bits (122), Expect = 4e-06
Identities = 42/187 (22%), Positives = 65/187 (34%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG +Y +LG P + +YN + T H
Sbjct: 31 HKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLM 90
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N +VPL++GA D+AFPR+N + V G Y P
Sbjct: 91 PLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAP 149
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ VD I + L G++S + +++PLFV +
Sbjct: 150 LTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVV 209
Query: 542 AFLLLLS 562
AF+L+ +
Sbjct: 210 AFILIFA 216
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 53.2 bits (122), Expect = 4e-06
Identities = 50/187 (26%), Positives = 65/187 (34%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG Y EL P ++YN ++T H
Sbjct: 27 HKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIV 86
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L+PL++G D+AFPR+N + F V G T YPP
Sbjct: 87 PAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPP 144
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LS G +L I SL L G SS +PLF A+ T
Sbjct: 145 LSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLAT 202
Query: 542 AFLLLLS 562
+ L+LLS
Sbjct: 203 SSLILLS 209
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 52.4 bits (120), Expect = 7e-06
Identities = 46/189 (24%), Positives = 69/189 (36%), Gaps = 1/189 (0%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 178
HK IG Y +L P + IG D+ YN I T H
Sbjct: 29 HKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFA 87
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
LVPL++G IAFPR+N + V+ G G Y
Sbjct: 88 VPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYV 146
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
PLS G+ D+ + +S+ S D++PLFV ++ +
Sbjct: 147 PLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLV 206
Query: 539 TAFLLLLSL 565
T+FL++L++
Sbjct: 207 TSFLVILAM 215
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 52.4 bits (120), Expect = 7e-06
Identities = 41/146 (28%), Positives = 54/146 (36%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG LY L +P + +YN +VT H
Sbjct: 110 HKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLM 169
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N +P+ L D+ PR+N++ G G G T+YPP
Sbjct: 170 PILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPP 227
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISS 439
LS G VD +FSLHLAG+SS
Sbjct: 228 LSI-WEGSGFGVDYLMFSLHLAGVSS 252
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 51.2 bits (117), Expect = 2e-05
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 4/152 (2%)
Frame = +2
Query: 122 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 301
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 302 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 469
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 470 XXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+ +LPL + A+ ITA L +L
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFAL 237
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 50.0 bits (114), Expect = 4e-05
Identities = 46/189 (24%), Positives = 65/189 (34%), Gaps = 1/189 (0%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG +Y +L P + + YN I+T H
Sbjct: 24 HKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFII 83
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYP 358
N +VPL+LGA D+A PR+N + GA G T Y
Sbjct: 84 QAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYY 143
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
P S A VD + ++ L G SS S ++P++V +V
Sbjct: 144 PFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFA 200
Query: 539 TAFLLLLSL 565
+ L L SL
Sbjct: 201 ASVLNLFSL 209
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 48.0 bits (109), Expect = 2e-04
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Frame = +2
Query: 86 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 265
EL P + + D +YN + T H N L+P ++GAPD+AFP++N
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122
Query: 266 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 436
F G A +G YPP+S + + H L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182
Query: 437 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV 523
S F ++P+FV
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFV 211
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 47.2 bits (107), Expect = 3e-04
Identities = 46/187 (24%), Positives = 66/187 (35%), Gaps = 1/187 (0%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXX 178
HK +G LY EL G I DD +YNT + H
Sbjct: 14 HKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQ 73
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N +PL++GA D+AFPR+N + + + T YP
Sbjct: 74 IPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYP 133
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
P S I H + FS+ L G +S +++L +FV A +
Sbjct: 134 PYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-L 189
Query: 539 TAFLLLL 559
AF+L L
Sbjct: 190 AAFVLQL 196
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 47.2 bits (107), Expect = 3e-04
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +2
Query: 206 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 382
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 383 RGRSVDLAIFSLHLAGISS 439
+ VDL + + +AG SS
Sbjct: 144 KSIGVDLILLGIIIAGFSS 162
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 46.0 bits (104), Expect = 6e-04
Identities = 38/185 (20%), Positives = 63/185 (34%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
H D+G ++ A+L P S + YN + T H
Sbjct: 29 HTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAI 88
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
L+P +LG+ D+AFPR+ F + +G +YPP
Sbjct: 89 PVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPP 147
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LSS + G + D + + IS+ S ++P+F +T
Sbjct: 148 LSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVT 207
Query: 542 AFLLL 556
A ++L
Sbjct: 208 AVMIL 212
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 46.0 bits (104), Expect = 6e-04
Identities = 38/187 (20%), Positives = 64/187 (34%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK I LY +L P + Q YN ++T H
Sbjct: 24 HKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAM 83
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N +VPL +GA D++FP +N + F + G T Y
Sbjct: 84 PLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYAS 142
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
LS + +G +D + L ++G+ + ++ +LPLF +
Sbjct: 143 LS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVA 200
Query: 542 AFLLLLS 562
+ L+L +
Sbjct: 201 SALILFA 207
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = +2
Query: 206 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 385
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 386 GRSVDLAIFSLHLAGISS 439
VD I++L ++GI +
Sbjct: 185 DVGVDYYIWALQISGIGT 202
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +2
Query: 206 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 385
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 386 GRSVDLAIFSLHLAGISS 439
G VD I++L L+G+ +
Sbjct: 184 GVGVDYYIWALQLSGLGT 201
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 44.0 bits (99), Expect = 0.002
Identities = 31/120 (25%), Positives = 49/120 (40%)
Frame = +2
Query: 206 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 385
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 386 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
G VD I+SL LA + S +PLF TA +++ ++
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 43.2 bits (97), Expect = 0.004
Identities = 29/119 (24%), Positives = 50/119 (42%)
Frame = +2
Query: 206 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 385
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 386 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLS 562
VD +S+ ++GI + F+++ +F+ + L+L+S
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILIS 237
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 42.3 bits (95), Expect = 0.008
Identities = 35/185 (18%), Positives = 65/185 (35%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
H D+G ++ A+L +P S + Y + T H
Sbjct: 29 HTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAI 88
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
L+P +LG+ D+A+PR++ F + +G +YPP
Sbjct: 89 PMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPP 147
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+S + G + D + + IS+ S D++P++ +T
Sbjct: 148 LASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVT 207
Query: 542 AFLLL 556
A ++L
Sbjct: 208 ATMIL 212
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 41.5 bits (93), Expect = 0.013
Identities = 41/188 (21%), Positives = 61/188 (32%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG LY +L P + YN ++T HA
Sbjct: 32 HKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLI 91
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N +PL LG D+A PR+N G T Y P
Sbjct: 92 PLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYP 151
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 541
L+ + G SV + ++ L G+ S ++P+F ++ T
Sbjct: 152 LTMDGNQTGVSVFMV--AVILNGLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFAT 209
Query: 542 AFLLLLSL 565
+ L LL+L
Sbjct: 210 SILQLLTL 217
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 41.5 bits (93), Expect = 0.013
Identities = 26/117 (22%), Positives = 49/117 (41%)
Frame = +2
Query: 212 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 391
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 392 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLS 562
S D + + LA I+S S ++P+ + + TAF++ ++
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIA 240
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 41.1 bits (92), Expect = 0.017
Identities = 26/118 (22%), Positives = 48/118 (40%)
Frame = +2
Query: 212 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 391
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 392 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+D + IS+ S +++P+FV AV + +F+++ +L
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFAL 222
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 41.1 bits (92), Expect = 0.017
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 4/153 (2%)
Frame = +2
Query: 116 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 295
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 296 XXXXXXXIVENGAGTG-*TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 463
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 464 XXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLS 562
SF +LPL + A ITA + LLS
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLS 250
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 40.7 bits (91), Expect = 0.023
Identities = 44/189 (23%), Positives = 68/189 (35%), Gaps = 1/189 (0%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 178
H D+G LY AEL PG+ I D +N + T H
Sbjct: 20 HTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFI 79
Query: 179 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 358
N VP+++ D+A+P++N I F + T P
Sbjct: 80 LPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----P 133
Query: 359 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 538
P S I+ G + D+ IF L + GISS S Q+PL +
Sbjct: 134 PYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLS 192
Query: 539 TAFLLLLSL 565
++ ++L++L
Sbjct: 193 SSLIVLVAL 201
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 40.3 bits (90), Expect = 0.030
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 3/151 (1%)
Frame = +2
Query: 122 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 301
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 302 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 472
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 473 XXXXXXXXSFDQLPLFV*AVGITAFLLLLSL 565
+F +LP+ + + ITA L +L
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFAL 240
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 40.3 bits (90), Expect = 0.030
Identities = 32/123 (26%), Positives = 44/123 (35%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HKDIG LY EL + G+ + YN V+ H
Sbjct: 22 HKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFIS 81
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N LVPL +GA D+AFPR+N + + G T+Y P
Sbjct: 82 PFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAP 140
Query: 362 LSS 370
L++
Sbjct: 141 LNT 143
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 39.5 bits (88), Expect = 0.053
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +2
Query: 86 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 262
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 263 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP 361
+ + V G G G T+YPP
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPP 159
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 39.1 bits (87), Expect = 0.070
Identities = 23/57 (40%), Positives = 27/57 (47%)
Frame = +1
Query: 250 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTT 420
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPT 135
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 37.9 bits (84), Expect = 0.16
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 86 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 259
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 260 NNIRF 274
N+I F
Sbjct: 148 NSIGF 152
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 37.5 bits (83), Expect = 0.21
Identities = 23/87 (26%), Positives = 34/87 (39%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG +Y +L PG + + +N + T HA
Sbjct: 29 HKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVM 88
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRIN 262
N +PL++GA D+AFPR+N
Sbjct: 89 PLLSAFM-NYFLPLMIGARDVAFPRLN 114
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 36.7 bits (81), Expect = 0.37
Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +2
Query: 212 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 388
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 389 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 532
D A ++ L GI + LPLFV AV
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAV 218
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 35.9 bits (79), Expect = 0.65
Identities = 37/174 (21%), Positives = 57/174 (32%)
Frame = +2
Query: 2 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 181
HK IG Y +L P + + Y+++ T H
Sbjct: 49 HKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYAL 108
Query: 182 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 361
N L PL+LG+ D+AFPR+ + + G Y P
Sbjct: 109 PVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVP 167
Query: 362 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 523
L+S G ++D+ + L GIS+ S D+LP+ V
Sbjct: 168 LTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIV 221
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 34.3 bits (75), Expect = 2.0
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = +2
Query: 206 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 382
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 383 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLS 562
G +L +L L+G+SS + ++PLFV TA L++++
Sbjct: 139 YGLGTNLIQIALILSGLSS--TLTGVNFVMTITKMKKVPYLKMPLFVWGFFTTAILMIIA 196
Query: 563 L 565
+
Sbjct: 197 M 197
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 33.1 bits (72), Expect = 4.6
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +2
Query: 92 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 271
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 272 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS 370
F + +G +G T Y LS+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSA 167
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 33.1 bits (72), Expect = 4.6
Identities = 31/152 (20%), Positives = 53/152 (34%)
Frame = +2
Query: 107 LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXX 286
L+G D YN I T H L+P +L A D+ FPR++
Sbjct: 75 LVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYI 132
Query: 287 XXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 466
+ G +YPPL+ G + D + + IS+
Sbjct: 133 VGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIV 192
Query: 467 XXXXXXXXXXSFDQLPLFV*AVGITAFLLLLS 562
S ++P+F A+ I A +++++
Sbjct: 193 GTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIA 224
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 32.7 bits (71), Expect = 6.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 10 YWNIIFYFWYLIRNNWNIFKTFNS 81
YWNI+F+FWYLI ++ K NS
Sbjct: 348 YWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 8.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 283 TPLPYIINFKKNCRKWCRN 339
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,666,470
Number of Sequences: 1657284
Number of extensions: 6478802
Number of successful extensions: 13028
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 12468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12916
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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