Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0697
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0972 - 8176013-8176960 31 0.64
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 30 0.84
05_07_0219 - 28474661-28475146,28475979-28476644 29 1.5
02_05_0600 - 30273080-30274692,30274709-30274949 29 1.9
01_05_0143 + 18578132-18578263,18578710-18578850,18579232-18579348 29 1.9
04_04_0069 + 22506885-22508354 29 2.6
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 28 3.4
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 28 4.5
06_01_0631 - 4605111-4605482,4605571-4605903,4605940-4605977,460... 27 5.9
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830... 27 5.9
02_01_0490 + 3541056-3542276 27 5.9
11_06_0386 + 23012139-23012530,23012773-23012955,23013094-230131... 27 7.8
02_04_0467 + 23161572-23162757,23162856-23163418 27 7.8
01_06_1293 - 36050847-36051304,36052343-36052826 27 7.8
>07_01_0972 - 8176013-8176960
Length = 315
Score = 30.7 bits (66), Expect = 0.64
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 428 DVEWSMTVAKRKSNTAT-SRHGTLHVAGRFSRGKVNDKWAGARRH 297
DV W+ + K+ A+ S+ G + + +SRGKV DKW G H
Sbjct: 214 DVAWAPVLGLAKATIASASQDGKVVI---WSRGKVGDKWEGKVMH 255
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 30.3 bits (65), Expect = 0.84
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 141 RQVMLRWSQYNRQPSGYIRRLSRFA 67
R + LR+ + R P+G++RRL+ FA
Sbjct: 241 RVLFLRYEEMKRDPAGHVRRLAEFA 265
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 422 EWSMTVAKRKSNTATSRHGTLHVAGRFSRGKVNDKWAGARRH 297
EW VAK K + S +G G+F++ K+ + G H
Sbjct: 312 EWEAIVAKEKKSDEASGNGEKKFRGKFNKSKIECRRCGKFGH 353
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 29.1 bits (62), Expect = 1.9
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 200 RSHGWWCGRRCVALPTPSSFMASGPVGNAAN*RAYVLRPTYHLP-CLAKIFLRHVRYRVS 376
R HGW RRC A + S+ + S P A A V R H P CL + L R++
Sbjct: 54 RLHGWPLCRRCWASTSSSTGLPSPPPTGLAYYAAVVGRLRLHRPACLRRRRLVFPPARLA 113
Query: 377 TSPYLI 394
P L+
Sbjct: 114 FMPPLL 119
>01_05_0143 + 18578132-18578263,18578710-18578850,18579232-18579348
Length = 129
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 140 RASPGAAHVQRSAGGGRAACRSHGWWCGRRCVAL 241
R P AA SA GG ACR CGR + L
Sbjct: 44 RRLPAAACAAASAAGGAEACRRRVDGCGRAALGL 77
>04_04_0069 + 22506885-22508354
Length = 489
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 149 PGAAHVQRSAGGGRAACRSHGWWCG 223
P +A + +AG G +A S WWCG
Sbjct: 48 PASATRRVAAGSGVSAAGSEPWWCG 72
>07_01_0769 +
5908942-5908946,5909085-5909666,5910370-5910429,
5910635-5910674,5910767-5910860,5911582-5911952
Length = 383
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 176 AGGGRAACRSH-GWWCGRRCVALPTPSSFMASGPVGNAA 289
A GGR CRS+ WW G + T + G G A
Sbjct: 285 ADGGRGGCRSYRPWWMGAMIYSTDTSDADCGGGRGGRLA 323
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 179 GGGRAACRSHGWWCGRRCVALPTPSSFMASGPVGNA 286
GGG AA R GWW R L S + G V A
Sbjct: 5 GGGAAARRKGGWWWWREEAVLAYQSLGVVYGEVAAA 40
>06_01_0631 -
4605111-4605482,4605571-4605903,4605940-4605977,
4606208-4606520,4606622-4607967,4608265-4608334,
4608478-4608555
Length = 849
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 443 KLFYLDVEWSMTVAKRKSNTATSRHGTLHVAGRFSRGKVND 321
+L+ DV W++ A K + S + T H G + V+D
Sbjct: 282 QLWAYDVAWAVATATEKVHRTRSLNPTFHPPGNIGKNLVDD 322
>04_04_0725 -
27581658-27581663,27582379-27582481,27582697-27583025,
27583263-27583365,27583490-27583671,27584135-27584324,
27584570-27584665,27584960-27585054,27585396-27585590
Length = 432
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 418 GQ*QLQKENQIRRRRDTVPYMSQEDFREAR*MISGPEHVGTLIGSI 281
G + ++ +IR+R DT+P +S ED R P+ +G ++ ++
Sbjct: 269 GDKERRELGEIRKRWDTLPELSAEDERSRGKCPLTPQEIGLMLRAL 314
>02_01_0490 + 3541056-3542276
Length = 406
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 255 RLWPAGRWAMLPI--NVPTCSGPLIIYLASRKSSCDM*GTVSRRR 383
R + AG A P+ NVP CS P+ + RK + + SR R
Sbjct: 337 RSYSAGVRAATPVVLNVPVCSRPVFGFFKDRKDAAAKDSSASRPR 381
>11_06_0386 +
23012139-23012530,23012773-23012955,23013094-23013151,
23013828-23013872
Length = 225
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 143 ASPGAAHVQRSAGGGRAACRSHGWWCGRRCVALPTPSSFMASG 271
A+ G+A +R GGR C +G R C A +P+S +SG
Sbjct: 49 AAGGSACRRRHRRGGRRGCAKNGAGSARACGA-RSPTSSASSG 90
>02_04_0467 + 23161572-23162757,23162856-23163418
Length = 582
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 223 ETVRRSAHAEFVYGQRAGGQCCQLTCLRAPAHL 321
E V S + ++ AGG+ +L C+ P+HL
Sbjct: 23 EAVTLSTSSRWIVDDEAGGRRVKLACVNWPSHL 55
>01_06_1293 - 36050847-36051304,36052343-36052826
Length = 313
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 128 SMTCRASPGAAHVQRSAGGGRAACRSHG 211
+M +A P +AH+ +AG G A HG
Sbjct: 209 TMYLQAPPSSAHLAAAAGRGAAEAEGHG 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,580
Number of Sequences: 37544
Number of extensions: 274571
Number of successful extensions: 950
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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