Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0697
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)                  27   7.9  
SB_22567| Best HMM Match : Trypsin (HMM E-Value=6.6e-30)               27   7.9  

>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 283  CCQLTCLRAPAHLSFTLPRENLPATCK-VPC 372
            CC L CL  P +   +L     P  C+ VPC
Sbjct: 1136 CCPLLCLAVPCYALLSLAMSCCPLLCRAVPC 1166



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 283  CCQLTCLRAPAHLSFTLPRENLPATCK-VPC 372
            CC L CL  P +   +L     P  C+ VPC
Sbjct: 1196 CCPLLCLAVPCYALLSLAMSCCPLLCRAVPC 1226



 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 283  CCQLTCLRAPAHLSFTLPRENLPATC-KVPC 372
            CC L CL  P ++  +L     P  C  VPC
Sbjct: 1116 CCPLLCLAVPCYVVLSLAMPCCPLLCLAVPC 1146



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +1

Query: 283  CCQLTCLRAPAHLSFTLPRENLPATCK-VPC 372
            CC L C   P ++  +L     P  C+ VPC
Sbjct: 1156 CCPLLCRAVPCYVVLSLAMPCCPLLCRAVPC 1186


>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 62  SEAKRDNRRIYPLG*RLYCDQRSMTCRASPGAAHVQRSAGGGRAACRSHGWW 217
           S+ +R N R+ P+      D RSM C    G    Q  + GG   C   G W
Sbjct: 184 SDCQRTNGRLVPV------DSRSMICAGGQGKGGCQGDS-GGPFVCEEGGKW 228


>SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 191 AACRSHGWWCGRR 229
           A C  HGWWC  R
Sbjct: 215 AWCTDHGWWCRNR 227


>SB_56505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 343 NLPATCKVPCLDVAVFD 393
           NLPA C +PC D  V D
Sbjct: 265 NLPAKCSMPCKDPQVID 281


>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
          Length = 687

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = +2

Query: 62  SEAKRDNRRIYPLG*RLYCDQRSMTCRASPGAAHVQRSAGGGRAACRSHGWWCGRRCVA 238
           S AK D +     G  L  D  SM C   PG    Q  + GG   C   G W  R  V+
Sbjct: 556 SNAKCDKKN----GELLPVDDASMVCAGGPGRGGCQGDS-GGPLVCNEAGRWVLRGIVS 609


>SB_22567| Best HMM Match : Trypsin (HMM E-Value=6.6e-30)
          Length = 249

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = +2

Query: 62  SEAKRDNRRIYPLG*RLYCDQRSMTCRASPGAAHVQRSAGGGRAACRSHGWWCGRRCVA 238
           S AK D +     G  L  D  SM C   PG    Q  + GG   C   G W  R  V+
Sbjct: 96  SNAKCDKKN----GELLPVDDASMVCAGGPGRGGCQGDS-GGPLVCNEAGRWVLRGIVS 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,233
Number of Sequences: 59808
Number of extensions: 292283
Number of successful extensions: 893
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)