Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0697
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    31   0.32 
U80452-12|AAB37851.1|  195|Caenorhabditis elegans Hypothetical p...    28   3.0  
AC024742-1|AAK85497.1|  198|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine re...    27   5.3  
AF408763-1|AAO27842.1|  459|Caenorhabditis elegans unknown prote...    27   9.2  

>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
 Frame = +2

Query: 143 ASPGAAHVQRSAGGGRAACRSHGWWCGRRCVALPTPSSFMASGPVGNAAN*RAYVLRPTY 322
           A PG  ++   AGGG   C   G  CG  C   P P      G  G     R+   +PT+
Sbjct: 17  ACPGLLNIFGGAGGG--GCGGCGGGCGGGCGCAPPPPPCCGGGCGGCGRKKRSLPEKPTF 74

Query: 323 ------------HLPCLAKIFLRHVRYRVSTSPYLIFFLQLSLTIQHPNRIVSIK-LINQ 463
                       + P L KI L +++   S S   I  +  S  IQ    + S K  +  
Sbjct: 75  VGIADSGDDVMCNTPALKKIILENIQTTASDSSKAINTVLESRQIQRFVVVCSEKPFVFT 134

Query: 464 FRA 472
           FRA
Sbjct: 135 FRA 137


>U80452-12|AAB37851.1|  195|Caenorhabditis elegans Hypothetical
           protein C16C8.7 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 338 AKIFLRHVRYRVSTSPYLIFFLQLSLTIQHPNRIVSI 448
           AK F+R ++Y V+ +      L +S  ++HP+ I+S+
Sbjct: 80  AKEFIRRLKYAVNHADSATVALLVSKDVEHPDLIISL 116


>AC024742-1|AAK85497.1|  198|Caenorhabditis elegans Hypothetical
           protein Y104H12BL.1 protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 138 QVMLRWSQYNRQPSGYIRRLSRFASD 61
           ++++RW  Y+ + +G  RRL  F SD
Sbjct: 77  EILMRWVNYHLERAGTQRRLHNFTSD 102


>AF022976-8|AAC69087.2|  366|Caenorhabditis elegans Serpentine
           receptor, class w protein107 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 20/77 (25%), Positives = 38/77 (49%)
 Frame = +2

Query: 227 RCVALPTPSSFMASGPVGNAAN*RAYVLRPTYHLPCLAKIFLRHVRYRVSTSPYLIFFLQ 406
           + +AL T +SF+A  P+G     +A++ + T  +  L  +    V + + T+   IF   
Sbjct: 269 KLIALLTITSFLADTPLGCIGIAKAFIQQGTKLMRFLTDLI---VYFNILTTAMTIFHPV 325

Query: 407 LSLTIQHPNRIVSIKLI 457
           + L +    RI + KL+
Sbjct: 326 MCLLMSSQYRITARKLL 342


>AF408763-1|AAO27842.1|  459|Caenorhabditis elegans unknown protein
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 409 QLQKENQIRRRRDTVPYMSQEDFREAR 329
           +++KEN+IR+R    P   Q D RE+R
Sbjct: 163 EIEKENEIRKRTTLQPQQRQRD-RESR 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,511,064
Number of Sequences: 27780
Number of extensions: 201984
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)