Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0697
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 298 TLIGSIAHRPAGHKRTRRGQSD 233
           +L+GSIA   +  +R RRG +D
Sbjct: 9   SLLGSIARSLSLDRRARRGAAD 30


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 344 FSRGKVNDKWAGARRHVNWQHCPP 273
           F+R KV      AR   N+  CPP
Sbjct: 192 FTRDKVAPILVRARETPNYTACPP 215


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 203 SHGWWCGRRCVAL 241
           SHGW  G+R  +L
Sbjct: 27  SHGWTNGKRSTSL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,277
Number of Sequences: 438
Number of extensions: 2555
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)