Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0697
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58880.1 68416.m06562 F-box family protein contains F-box dom... 30 0.70
At1g73010.1 68414.m08443 expressed protein similar to phosphatas... 29 1.2
At2g19400.1 68415.m02263 protein kinase, putative contains prote... 29 1.6
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00... 29 2.2
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 28 3.8
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 27 5.0
At5g55590.1 68418.m06931 pectinesterase family protein contains ... 27 6.6
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 27 8.7
At4g39380.1 68417.m05574 expressed protein 27 8.7
>At3g58880.1 68416.m06562 F-box family protein contains F-box domain
Pfam:PF00646
Length = 454
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +1
Query: 154 SCTCT--EERGRRAGSLPVSRLVVRE 225
+CTC EE+GR S PV RL +RE
Sbjct: 366 ACTCISREEKGRSLASCPVKRLEIRE 391
>At1g73010.1 68414.m08443 expressed protein similar to phosphatase,
orphan 1 (GI:20196841) [Mus musculus], (GI:20196839)
[Homo sapiens]; contains TIGRFAM TIGR01489:
2,3-diketo-5-methylthio-1-phosphopentane phosphatase
profile; contains TIGRFAM TIGR01488: HAD-superfamily
hydrolase, subfamily IB (PSPase-like)
Length = 295
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +1
Query: 130 HDLSRLPRSCTCTEERGRRAGSLPVSRLVVRETVRRSAHAEFVY-GQRAGGQCCQLTCLR 306
HD ++ P SC+C L + R +++++ + + +Y G AG C L
Sbjct: 146 HDFTKSPHSCSCGTCPPNMCKGLIIER--IQQSLAKEGKKKMIYLGDGAGDYCPSLKLNT 203
Query: 307 APAHLSFTLPRENLP 351
+ +PR+N P
Sbjct: 204 E----DYVMPRKNFP 214
>At2g19400.1 68415.m02263 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 527
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 89 IYPLG*RLYCDQRSMTCRASPGAAHVQRSAGGGRAACRSHGWW 217
++P G RL + R + CR + H S G G ++H W+
Sbjct: 372 VFPEGARLTPEARDLICRLLCDSEHRLGSHGAGAEQIKAHTWF 414
>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 571
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 428 DVEWSMTVAKRKSNTATS-RHGTLHVAGRFSRGKVNDKWAGARRHVNWQ 285
D+E + V RK + R G H+ G+FS K+N + R N Q
Sbjct: 300 DIEDQIEVTPRKKSFRRFLRSGIKHILGKFSSSKINSPSSSETRRSNRQ 348
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 403 QKENQIRRRRDTVPYMSQEDFREAR*MISGPEHVGTLIGSIAHRP 269
+K +++ + PY S+E F ++ M GPE T I + +RP
Sbjct: 739 KKAEKLQTKSLPYPYTSKEVFEQSMRMPIGPEFNPTTIVGVLNRP 783
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 27.5 bits (58), Expect = 5.0
Identities = 8/26 (30%), Positives = 20/26 (76%)
Frame = -1
Query: 138 QVMLRWSQYNRQPSGYIRRLSRFASD 61
+V+L+W ++ + +GY ++++ F+SD
Sbjct: 271 KVLLKWMNFHLKKAGYEKQVTNFSSD 296
>At5g55590.1 68418.m06931 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 380
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 163 CTEERGRRAGSLPVSRLVVRETVRRSAHAEFVYGQR 270
C R G +P S+ + R+ V+ EF+YG +
Sbjct: 341 CRGRGAERGGRVPWSKTLTRDEVKPFLGREFIYGDQ 376
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 453 SLIETILFGC*MVNDSCKKKIKYGDVETRYLTC 355
S++E+IL C CKK + YG T C
Sbjct: 100 SVLESILIPCPNAKLGCKKNVSYGKELTHEKEC 132
>At4g39380.1 68417.m05574 expressed protein
Length = 518
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 407 VAKRKSNTATSRHGTLHVAGRFSRGKVNDKWAGARRHVNWQH 282
+A++K+ TAT + G+F+R K + K H + +H
Sbjct: 1 MARKKTETATESSKEIKAKGKFTRAKKSMKTTTKNIHQSGKH 42
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,325
Number of Sequences: 28952
Number of extensions: 186759
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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