Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0694
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    31   0.092
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    29   0.37 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.49 
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    28   0.86 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    26   3.5  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   6.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   6.1  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    25   8.0  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    25   8.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   8.0  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 31.5 bits (68), Expect = 0.092
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 482 SPEKSAIKANKMIEQATNGKISEAFYYDDFLS 577
           SP   A+  N++I+ A    ISEAFYYD  +S
Sbjct: 327 SPTSIAV-TNRLIKSAAKWSISEAFYYDHIVS 357


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 46  TQTANTPRVLPSDNRPKVPVHKPQNDSVTKTTNLRLFDRNP 168
           +QT +  + L S+  P  P   P NDS ++ TN      NP
Sbjct: 97  SQTGSPSQSLSSNKEPSSPGISPSNDSQSQNTNHTSISANP 137


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 253  RQRTD-SEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHRQADE-CETKI 426
            RQ ++ SEGT     IP+EE  + +     E  R RS I  E  K    R+ ++  + ++
Sbjct: 1480 RQNSNKSEGTSKDTEIPNEEEMERKKVMQQEVLRLRSRIAKELQKNELLRKQNQVLQDQV 1539

Query: 427  PAQHKTVVRS 456
             A  +TVV S
Sbjct: 1540 KALQETVVSS 1549


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 160 RNPPKSRRGDE*QFRVFASLQLAAADRALRGRQRTDSEGTMARHPIPHEELFQTRTREDH 339
           R+   SRR ++ Q R ++  +    DR  R R+    E    R P+ HE  +Q   +   
Sbjct: 41  RDERSSRRYEDSQRRDYSPAR--RRDRYERHRESVREESP--RRPVEHERNWQPELKHGR 96

Query: 340 EKHRDRS-EIRNERNK 384
           E+ R+R  E R +R +
Sbjct: 97  ERFRERDYEGRRDRKE 112


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 183 SATLWRIPIEKS*VGRFSNAIVLWFVHGYFRAVIAWQN 70
           ++T  RIP +   +   +  I+L   +GYF  V AW++
Sbjct: 85  ASTFHRIPFQFLYLAVIATVIILASYYGYFDGVPAWRS 122


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 386 VIVIDKLMNVKRKFLRNIKQLYGVKAALLDFNSPE--KSAIKANKMI 520
           VIV+  L  +   +LR    LYG+    LD  +PE  K  I A K++
Sbjct: 203 VIVVGWLNTIHMDWLRTGSMLYGLDPYDLDAKAPELPKPLIPAMKLM 249


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 250  LGERDQLQPVGERRKHEIVIRLLGDSLEDSDRKVVS 143
            +GE  +L  + E+  HE + RLLG+  +  + ++ S
Sbjct: 1154 IGELFKLSMLSEKIMHECIKRLLGNVTDPEEEEIES 1189


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 412 IHQLVDDDDICFFRF-EFQICLDVSHDLP*FAFETVP 305
           I  L D DD   F F EF I + ++ DL    ++TVP
Sbjct: 45  IWDLADIDDDGMFDFDEFAIAMKITFDLINGVYKTVP 81


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 259 RTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRH 396
           R+ S     RH    +E  +TR+   H  HR     R   ++ HRH
Sbjct: 125 RSRSTSPANRHRRKEKE--RTRSNHRHGSHRRHEPYRTHLSRHHRH 168


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
 Frame = +1

Query: 289 HPIPHEELFQTRTREDHEKH----RDRSEIRNERN--KCHRHRQADECETKIPAQHKTVV 450
           HP P +     +TR ++ +     R+++E RN+ N  +C  +++A +     P+  KT  
Sbjct: 152 HPPPRKMTSSEKTRSENRERKKRWREQNEERNKDNDLRCRVNKKAKKLFGSEPSIEKTNW 211

Query: 451 RS*SCTIRFQQSREVGDQS-QQNDRAGHEREDIRSLL 558
                T R  + +E       QN  +   R + +SLL
Sbjct: 212 IEAEFTRRHTKRKEKERACLSQNQSSNASRANSQSLL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,589
Number of Sequences: 5004
Number of extensions: 45208
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)