Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0694
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 40 0.002
At5g12230.1 68418.m01435 expressed protein 34 0.079
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 31 0.73
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 0.97
At1g51900.1 68414.m05850 hypothetical protein 30 0.97
At1g62170.1 68414.m07013 serpin family protein / serine protease... 30 1.3
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 30 1.3
At5g13340.1 68418.m01535 expressed protein 29 1.7
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 29 1.7
At1g13970.1 68414.m01645 expressed protein 29 1.7
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 2.2
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 2.2
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 29 3.0
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 28 3.9
At5g19480.1 68418.m02321 expressed protein 28 3.9
At3g52110.1 68416.m05719 expressed protein 28 5.2
At3g12100.1 68416.m01506 cation efflux family protein / metal to... 28 5.2
At2g25240.1 68415.m03020 serpin, putative / serine protease inhi... 28 5.2
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 28 5.2
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 27 6.8
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 27 6.8
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 6.8
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 27 6.8
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 27 9.0
At5g27860.1 68418.m03342 expressed protein 27 9.0
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 27 9.0
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 27 9.0
At2g30500.1 68415.m03715 kinase interacting family protein simil... 27 9.0
At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containi... 27 9.0
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 39.5 bits (88), Expect = 0.002
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Frame = +2
Query: 116 KTIALLKRPTYDFSIGILQRVAEETNDNFVFSPLSNWLQLIALSEGAKGRTLKELWRVTR 295
++I+L + + + + ++ V++ N N +FSP S + L ++ G+ G T ++ +
Sbjct: 5 ESISLQNQVSMNLAKHVITTVSQ--NSNVIFSPASINVVLSIIAAGSAGATKDQILSFLK 62
Query: 296 F---HMRNCFKREL-GKIMRNIETDLKFETKETNVIVIDKLMNVKRKFLRNIKQLYGVKA 463
F N F E+ ++ + + + N IDK ++ K F + ++ Y +
Sbjct: 63 FSSTDQLNSFSSEIVSAVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKAAS 122
Query: 464 ALLDFNSPEKSAI-KANKMIEQATNGKISE 550
DF S I + N E+ TNG I+E
Sbjct: 123 NQADFQSKAVEVIAEVNSWAEKETNGLITE 152
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 33.9 bits (74), Expect = 0.079
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 295 IPHEELFQTRTRE-DHEKHRDRSEIRNERNKCHRHRQADECETK 423
IP + +++ R+ H+KH+DR + ++ +K H+H+ D + K
Sbjct: 114 IPSKSKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDK 157
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 301 HEELFQTRTREDHEKHRDRSEIRNERNKCHRHRQADECETKIPAQHKTV 447
H++ ++R+RED K RD S +E + HR R H+ V
Sbjct: 680 HKKRSRSRSREDRSKTRDTSRNSDEAKQKHRQRSRSRSLENDNGSHENV 728
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.3 bits (65), Expect = 0.97
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = +1
Query: 253 RQRTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCH----RHRQAD 408
R+ D R +E + R +DH HRD E R ER+ H RH + D
Sbjct: 450 REDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRERDDRHGREARHERRD 505
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 30.3 bits (65), Expect = 0.97
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 196 QFRVFASLQLAAADRALRGRQRTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNE 375
+FR SL + + R+R S H + + E F+ T+E+ E+ R R +
Sbjct: 619 EFRDMESLTYYMRQKGMHRRRRRSSTSPHCCHNVVYNE-FKV-TKEEEEEERQRLTTKRV 676
Query: 376 RNKCHRHRQ 402
+K H + Q
Sbjct: 677 HSKLHEYEQ 685
>At1g62170.1 68414.m07013 serpin family protein / serine protease
inhibitor family protein similar to phloem serpin-1
GI:9937311 from [Cucurbita maxima]; contains Pfam
profile PF00079: Serpin (serine protease inhibitor)
Length = 433
Score = 29.9 bits (64), Expect = 1.3
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 9/129 (6%)
Frame = +2
Query: 191 NDNFVFSPLSNWLQLIALSEGAKGRTLKELWRVTRFHMRNCFKRELGKIMRNIETDLKFE 370
N NFVFSP S L ++ + G +EL +++ EL I R I + + +
Sbjct: 89 NSNFVFSPASINAALTMVAASSGGEQGEELRSFILSFLKSSSTDELNAIFREIASVVLVD 148
Query: 371 TKE--------TNVIVIDKLMNVKRKFLRNIKQLYGVKAALLDFNS-PEKSAIKANKMIE 523
+ N + +D+ ++V K + A +DF S E+ + N
Sbjct: 149 GSKKGGPKIAVVNGMWMDQSLSVNPLSKDLFKNFFSAAFAQVDFRSKAEEVRTEVNAWAS 208
Query: 524 QATNGKISE 550
TNG I +
Sbjct: 209 SHTNGLIKD 217
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 235 DRALRGRQRTDS-EGTMARHPIPHEELFQTRTREDHEKHRDRS-EIRNERNKCHRHRQAD 408
DR R R R S E + R + + ++R R D + RDR E+R+ R R R
Sbjct: 101 DRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDR-DRRRSRDRDREVRHRRRSRSRSRSRS 159
Query: 409 ECETKIPAQHKTVVRS 456
E ++ +HK+ RS
Sbjct: 160 ERRSRSEHRHKSEHRS 175
>At5g13340.1 68418.m01535 expressed protein
Length = 242
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 283 ARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHRQADECETKIPAQHKTVV 450
+R P+ H RTR D + S + R+ R Q D + P++H+ +
Sbjct: 18 SRSPVTHRS--SRRTRRDRSRSPYTSRHKKSRSPAPRQHQRDRSSSLSPSEHRIAI 71
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Frame = +2
Query: 338 MRNIETDLKFETKETNVIVIDKLMNVKR--------KFLRNIKQLYGVKAALLDFNSPEK 493
+ N ET K ET + + + ID+ N+KR K L N+++ + L N PE
Sbjct: 1380 LNNEETRQKSETLQVSKVRIDRWSNLKRAILLRRFVKALENVRKFNPREPRFLPPN-PEV 1438
Query: 494 SAIKANKMIEQATNGKISEAFYYDDFL 574
A K N ++ N K + + D+ L
Sbjct: 1439 EAEKVNLRHQETQNKKNGDEWMVDNAL 1465
>At1g13970.1 68414.m01645 expressed protein
Length = 504
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 301 HEELFQTRTREDHEKHRDRS 360
H E F+T T EDH+ HR +S
Sbjct: 174 HHETFKTTTCEDHQDHRKKS 193
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 259 RTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHR 399
+TD + + +R H+ + ++ R +KH+ S +E + RHR
Sbjct: 649 KTDKKHSCSRKRHKHKTRYSSKDRHSRDKHKHESSSDDEYHSRSRHR 695
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 322 RTREDHEKHRDRS--EIRNERNKCHRHRQADECETKIPAQHKTVVR 453
R+R+ HEKHRD S E + R++ R + D + + +HK+ R
Sbjct: 740 RSRK-HEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEHGHRHKSSKR 784
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 259 RTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHR 399
+TD + + +R H+ + ++ R +KH+ S +E + RHR
Sbjct: 649 KTDKKHSCSRKRHKHKTRYSSKDRHSRDKHKHESSSDDEYHSRSRHR 695
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 322 RTREDHEKHRDRS--EIRNERNKCHRHRQADECETKIPAQHKTVVR 453
R+R+ HEKHRD S E + R++ R + D + + +HK+ R
Sbjct: 740 RSRK-HEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEHGHRHKSSKR 784
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 253 RQRTDSEGTMAR-HPIPHEELFQTRTREDHEKHRDRSEI 366
RQ DS TM + H + +LF+ R + D E +SE+
Sbjct: 220 RQAKDSVSTMQKLHELAQNQLFELRAQSDEETAGKQSEV 258
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/95 (24%), Positives = 38/95 (40%)
Frame = +1
Query: 253 RQRTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHRQADECETKIPA 432
R R + E R P + + R R+D ++ RDR R+ R + + ++ P
Sbjct: 4 RDRRERERDKDREP----DRDRRRGRDDRDRDRDRDRERDRERDRDRGLRNKKSRSRTPD 59
Query: 433 QHKTVVRS*SCTIRFQQSREVGDQSQQNDRAGHER 537
H S +SR + D+ + DR H R
Sbjct: 60 HHARARHVRSPERYRSRSRSI-DRDRDRDRQRHHR 93
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 235 DRALRG---RQRTDSEGTMARHPIPHEELFQTRTRE-DHEKHRDRSEIRNERN 381
DR LR R RT ARH + E +++R+R D ++ RDR R+
Sbjct: 45 DRGLRNKKSRSRTPDHHARARH-VRSPERYRSRSRSIDRDRDRDRQRHHRRRS 96
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 337 HEKHRDRSEIRNERNKCHRHRQADECETK 423
H KH+D+ E ++ +K H+H+ D + K
Sbjct: 130 HRKHKDKKE-KDREHKKHKHKHKDRIKDK 157
>At3g52110.1 68416.m05719 expressed protein
Length = 362
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 289 HPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHR 393
HP E+ F T T H RD +E E+N+ R
Sbjct: 54 HPKRPEDFFSTPTSSKHPSLRDTNETLTEQNQRRR 88
>At3g12100.1 68416.m01506 cation efflux family protein / metal
tolerance protein, putative member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 393
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 129 NAIVLWFVHGYFRAVIAWQNARSISSLSACLSATS 25
N + +WF Y R IA++ A ++ S CL S
Sbjct: 228 NLLGVWFFRNYARVNIAYRKAEDMNYHSVCLHVIS 262
>At2g25240.1 68415.m03020 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 324
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 383 NVIVIDKLMNVKRKFLRNIKQLYGVKAALLDFNS-PEKSAIKANKMIEQATNGKISEAFY 559
N + IDK ++K F ++ Y + +DF S P + + N E TNG I +
Sbjct: 31 NGVWIDKFFSLKLSFKDLLENSYKATCSQVDFASKPSEVIDEVNTWAEVHTNGLIKQILS 90
Query: 560 YD 565
D
Sbjct: 91 RD 92
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/99 (20%), Positives = 41/99 (41%)
Frame = +1
Query: 247 RGRQRTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHRQADECETKI 426
R R+R + E+ R ++ RDR + R+ + + H ++ ++
Sbjct: 73 RDRERDRHRSSREHRDRDREKDVDKEERNGKDRERDRDKDRDSKGRDHEKDRSRRSRSR- 131
Query: 427 PAQHKTVVRS*SCTIRFQQSREVGDQSQQNDRAGHERED 543
+H++ R S I + RE D+ + R ++ED
Sbjct: 132 SERHRSQEREKSLEIE-PKERETKDRDRDRRRHKDKKED 169
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +1
Query: 160 RNPPKSRRGDE*QFRVFASLQLAAADRALR-GRQRTDS-----EGTMARHPIPHEELFQT 321
R P +R D + RV + A +R+ R GR + S + +R P P+E+ ++
Sbjct: 237 RLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRES 296
Query: 322 RTREDHEKHRDRSEIRNE 375
R+ +EK R+RS R++
Sbjct: 297 RSPPPYEKRRERSRSRSK 314
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +1
Query: 160 RNPPKSRRGDE*QFRVFASLQLAAADRALR-GRQRTDS-----EGTMARHPIPHEELFQT 321
R P +R D + RV + A +R+ R GR + S + +R P P+E+ ++
Sbjct: 237 RLSPDYKRDDRRRERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPPYEKRRES 296
Query: 322 RTREDHEKHRDRSEIRNE 375
R+ +EK R+RS R++
Sbjct: 297 RSPPPYEKRRERSRSRSK 314
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 253 RQRTDSEGTMARHPIPHEELFQTRTRE---DHEKHRDRSEIRNERNKCHRHR 399
R+R SE P + L + R R+ D ++HRDR +++ +K + R
Sbjct: 869 RKRNRSESQNRSQSPPQKSLTRERVRDHDLDKDRHRDRDRQQHDLDKDRKRR 920
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +2
Query: 128 LLKRPTYDFSIGILQRVAEE--TNDNFVFSPLSNWLQLIALSEGAKGRTLKELWRVT-RF 298
++KRP ++FS G+ V EE +N + S +SN S + W T
Sbjct: 91 IIKRPVFEFSYGLKAAVIEEDASNRSSSGSAVSNSESCAQFSSADGSPSQSNAWDTTVPC 150
Query: 299 HMRNCFKRELGKIMRNIETDL 361
R C R + + DL
Sbjct: 151 KRRTCVGRPKSSSVEKLTKDL 171
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 110 NHKTIALLKRPTYDFSIG-ILQRVAEETNDNFVFSPLSNWLQLIALSEGAKGRTLKELWR 286
N +++ALL ++ +G +L R ++D F+F P + + L+ +G + W
Sbjct: 126 NPESVALLSSRGHESYLGKLLMRWTVLSSDAFIFFPAALFFVLVYHRNRTRGGKSEVAWH 185
Query: 287 VTRFHMRNC 313
+ + C
Sbjct: 186 IAMILLNPC 194
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 27.1 bits (57), Expect = 9.0
Identities = 25/102 (24%), Positives = 41/102 (40%)
Frame = +1
Query: 79 SDNRPKVPVHKPQNDSVTKTTNLRLFDRNPPKSRRGDE*QFRVFASLQLAAADRALRGRQ 258
S R K H +ND + +R R+ K RR R S + + + +
Sbjct: 19 SHRRRKDRRHHRRNDRDRDSLKVRKKSRSTSKKRR------RRQHSSDSSDSSYSDSSSE 72
Query: 259 RTDSEGTMARHPIPHEELFQTRTREDHEKHRDRSEIRNERNK 384
+DSE +R HE+ + + +E + HR + ER K
Sbjct: 73 SSDSEHEKSRRHKKHEKPKKAKDKERSKSHRHKRHKNRERKK 114
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +1
Query: 286 RHPIPHEELFQTRTREDHEKHRDRSEIRNERNKCHRHRQADECETKIPAQHK 441
+ PI ++ + T +K ++ + N RN+CH + DE + ++ A +K
Sbjct: 278 KEPIEKQKKEKAETDSKCKKVKNLMDA-NGRNRCHLLEKEDEADARVVATYK 328
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 321 RLKQFLMWNRVTRHSSFRVRPLAPSESAISCSQLERGEN 205
+L++F +W + H+ RPL+P+E + Q+ N
Sbjct: 621 QLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASN 659
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 27.1 bits (57), Expect = 9.0
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Frame = +1
Query: 106 HKPQNDSVTKTTNLRLFDRNPPKSRRGDE*QFRVFASLQLAAAD---RALRGRQRTDSEG 276
HK + DS + T + D + GDE R A L+L + + L ++ D +
Sbjct: 132 HKEEEDSSSLTDSGSDSDHSSANDEDGDEALIRRMAELELELQETKQKLLLQQESVDGDN 191
Query: 277 TM-ARHPIPHEELFQTRTREDHEKHR-DRSEIRNERNKCHRHRQADECETKIPAQHKTV 447
+ H I ++ +E +EK R EI N +N+ D E + A+ K+V
Sbjct: 192 NVDLLHKI---TTYEGELKEANEKMRMHEDEIANLKNQLQSFMSFD-TEDHLGAEQKSV 246
>At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 596
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 574 QEVVVIKGFGYLPVRGLLDHFVGFD 500
Q+VV GF ++ V+G L F+ FD
Sbjct: 538 QQVVKSPGFSWIEVKGKLCEFIAFD 562
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,464
Number of Sequences: 28952
Number of extensions: 237633
Number of successful extensions: 871
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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