Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0693
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   30   1.2  
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   5.0  
SB_8169| Best HMM Match : Mucin (HMM E-Value=2.7)                      28   6.6  
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   6.6  

>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = -1

Query: 446 LSPPTVENLTAIGVLLPMDSNTLAAL------YLVMS*VTSKYPKAPAPLACTTRSGIRS 285
           LSP TV NLT   V  P+ +N LA +      Y+V     SK  +      C T    + 
Sbjct: 154 LSPLTV-NLTGSCVSGPIRTNDLALITCPSEKYIVKQSALSKCFQNDKAFLCPTNILHKI 212

Query: 284 LSKDDISSRKLTSCNKAGPFLPTVC 210
            S D +   KLT    A  FLPT C
Sbjct: 213 GSFDWLGHTKLTKLKYARNFLPTSC 237


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +1

Query: 202 TAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAK 381
           T + T  ++GP         + + S  R+R+ E    + G G + Y     +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236


>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
 Frame = +1

Query: 217 VGKNGPALLQDVNFLDEMSSFDRERIPERVVH------AKGAGAFGYFEVTHDITKYSAA 378
           +  N   LLQ + F  +M  F  ++   R +H      +KG     YF    DI   + +
Sbjct: 258 ITSNAMGLLQSLTFFTQMRFFCHKQAVGRTLHILTTPDSKGKAVVDYFSAKTDILPSACS 317

Query: 379 KVFESIGKRTPIAVRFSTVGGESGSA 456
              E  G    +  R    G +S  A
Sbjct: 318 SFTEGAGNNALLTGRCHRWGRDSSGA 343


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 515  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 396
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 409 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 522
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_8169| Best HMM Match : Mucin (HMM E-Value=2.7)
          Length = 311

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 117 DQLINYKKTLKDSPGFHHH*IWSSCWNQNGDTNG 218
           ++L    K ++D PG     +W   W QN   NG
Sbjct: 199 EKLAEKYKLIRDKPGVSGIMLWDCSWAQNNKPNG 232


>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 160 PGESFKVFL*LMSWSVAGSLEAILYVP 80
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,469,679
Number of Sequences: 59808
Number of extensions: 412130
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)