Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0691
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50976| Best HMM Match : ABC1 (HMM E-Value=3.3e-09)                  53   1e-07
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        36   0.016
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_49394| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.2)            28   4.2  
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    28   4.2  
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)                27   5.5  
SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.5  
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_50976| Best HMM Match : ABC1 (HMM E-Value=3.3e-09)
          Length = 142

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 21/36 (58%), Positives = 29/36 (80%)
 Frame = +1

Query: 79  MFPKGMFIDNVVEVAKKELAWEVDYIREAECTRKFK 186
           +  K ++ +N VEVA++ELAWEVDY+REA+  RKFK
Sbjct: 107 LLAKELYAENAVEVARRELAWEVDYVREAQSARKFK 142


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
 Frame = +1

Query: 109 VVEVAKKELAWEVDYIREAECTRKFKTLLAQYPEYFVPDVIDELCAQEVITTELIDGVPL 288
           +V+  K+ L  E+D+  E +   K   +        VP+V+ +  ++ V+  E  +G  +
Sbjct: 472 LVDETKRNLPLELDFTHEGKNAEKVAKIFNSCTFLKVPEVLWKWTSRRVLVMEFCEGGKV 531

Query: 289 DKL-FDASYETRVD-IASKIMKLCLREMFVLRCMQTDPNWANFFYN---TNTKQVILLD 450
           D + F   +E   D ++ K+ +L    +FV   +  DP+  N         + +++LLD
Sbjct: 532 DDIEFMQDHEIMSDEVSRKLGELYSEMIFVTGYVHCDPHPGNVLVRKDCNGSVEIVLLD 590


>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = +1

Query: 103 DNVVEVAKKELAWEVDYIREAECTRKFKTLLAQYPEYFVPDVIDELCAQEVITTELIDGV 282
           DN  ++AK+  +   + + E   T++   LL Q  +  + D++ ++  +  I    I+GV
Sbjct: 419 DNRCKLAKENPSMIPNLVEECTLTQEQHNLLRQENKNLIQDLLYKIAKEHTI----INGV 474

Query: 283 PLDKLFDASYETRVDIASKIMKLC--LREMFVLRCMQTDPN 399
           P D +     E RV    ++  LC  + +    +C+Q   N
Sbjct: 475 PRDDIDQRVEEIRVREGKRVCPLCETMMDKKKRKCVQCGAN 515


>SB_49394| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.2)
          Length = 373

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 248 CAHNSSMTSGTKYSGYCANRVLNFL 174
           C H +  T+ T Y+ YCAN V + L
Sbjct: 158 CKHTTLATAQTHYTRYCANTVHSLL 182


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = -1

Query: 318 CLIGCVE*LI----ERYAVYQFCCYHFLCA 241
           C+ GC++  +      Y ++   CYH LCA
Sbjct: 246 CITGCIQWRVIIFFVHYGMHSMACYHLLCA 275



 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 318 CLIGCVE*LIERYAVYQ----FCCYHFLCAQFVYDVRNEVFRILC 196
           C+ GC++  +  Y V+       C+H LCA  + D  N V   +C
Sbjct: 204 CITGCIQWRVIIYCVHYGMHLMACHHLLCA--LRDAFNGVLSTIC 246


>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
          Length = 309

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +1

Query: 34  NSDIDNLVGVMKVWNMFPKGMFIDNVVEVAKKELAWEVDYIREAECTRKFKTLLAQYPEY 213
           N++ DN+V ++ +  M   G+F       A  +       +  A+C   F + L   PE 
Sbjct: 73  NNNNDNIVSIIIIKIMSLVGLFNLLFSCSADVDECLMNPCVSPAKCLNTFGSFLCNCPEG 132

Query: 214 FVPDVIDELC 243
           F PDV    C
Sbjct: 133 FTPDVTGLKC 142


>SB_42438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 37  SDIDNLVGVMKVWNMFPKGMFIDNVVEVAKKE-LAWEVDYIREAECTRKFKTLLAQYPEY 213
           S+++ L  ++   N+  KG   D VV +  +  L + + YI   +    +  L   YPE 
Sbjct: 151 SELNRLTDILAS-NLRHKGCGKDKVVGIYMERCLEYPIAYISALKAGGAYMPLELSYPEN 209

Query: 214 FVPDVIDELCAQEVITTE 267
            +  + ++     +ITT+
Sbjct: 210 LLKSIFEDSSPVAIITTD 227


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = +1

Query: 127 KELAWEVDYIREAECTRKFKTLLAQYPEYFVPDVIDELC-------AQEVITTELIDGVP 285
           +++  EV Y+R  E  +        Y E +   +++E         AQE++    + G  
Sbjct: 327 EQIKEEVGYLRYMEAKQLLNKTKPNYKEAY--KILEEAAFVHNYTKAQEMVAFSYLFGDH 384

Query: 286 LDKLFDASYETRVDIASK 339
           L + F  +YE  +D+A+K
Sbjct: 385 LPRNFSKAYEVLIDLANK 402


>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
 Frame = +1

Query: 73  WNMFPKGMF----IDNVVEVAKKELAWEVDYIREAECTRKFKTLLAQYPEYFVPDVI--- 231
           W++  + ++    +D ++ V      WEVD + +A            +  Y +PD +   
Sbjct: 301 WSIIAQALYTLNGMDFLITVDSYSGFWEVDELTQATAANVIHKTKQHFARYGIPDRVYSD 360

Query: 232 --DELCAQEVITTELIDGVPLDKLFDASYETRVDIASKIMK 348
              +    E   T+ +D  P+ +L     +T + +A  +++
Sbjct: 361 NGPQFANAENTPTKGMDSSPVQRLMSKRTKTTLPLAQHLLE 401


>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -2

Query: 383 IHLSTNISLRHSFMILDAIST-RVS--*DASNSLSRGTPSISSVVITSCA 243
           +H+S+N   R +F  LDA+   RVS   D+  S      S++ V+IT C+
Sbjct: 156 LHISSNRRFRQTFSCLDAVKEYRVSYRGDSVFSTLNLLRSVAIVLITGCS 205


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 YIREAECTRKFKTLLAQYPEYF 216
           Y RE ECT  F  ++  +PE F
Sbjct: 335 YTRECECTSTFMKMVPWHPELF 356


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,178,583
Number of Sequences: 59808
Number of extensions: 250269
Number of successful extensions: 544
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)