Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0691
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q (ubi...   153   8e-38
U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z78015-1|CAB01433.1|  206|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U21324-9|AAA62560.2|  755|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 8 protein.
          Length = 755

 Score =  153 bits (370), Expect = 8e-38
 Identities = 74/148 (50%), Positives = 103/148 (69%), Gaps = 4/148 (2%)
 Frame = +1

Query: 22  AKGINSDIDNLVGVMKVWNMFPKGMFIDNVVEVAKKELAWEVDYIREAECTRKFKTLLAQ 201
           A+GI+SDIDNLV V+ V  +FPKGMF+D  V VA++EL  E DY REA   +KF+ L+A 
Sbjct: 464 AEGIDSDIDNLVSVLSVGGIFPKGMFLDAFVGVARRELKQECDYEREARAMKKFRELIAD 523

Query: 202 YPEYFVPDVIDELCAQEVITTELIDGVPLDKLFDASYETRVDIASKIMKLCLREMFVLRC 381
           + + +VP+VIDEL +  V+TTEL+ G P+D   +     R  IA K ++LCL+E+F+ R 
Sbjct: 524 WQDVYVPEVIDELSSSRVLTTELVYGKPVDACVEEPQVVRDYIAGKFIELCLKEIFLWRF 583

Query: 382 MQTDPNWANFFYNTNTK----QVILLDF 453
           MQTDPNW+NFF   + K    +++LLDF
Sbjct: 584 MQTDPNWSNFFLGKHPKTGEPRLVLLDF 611


>U97407-1|AAB52478.2|  411|Caenorhabditis elegans Hypothetical
           protein C34G6.5 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 132 FFFRHFHNVIYEHAFRKHVPYLHNSYKVVNVTVNP 28
           F   +F N++Y  A+  H  Y+H   K+ N   +P
Sbjct: 122 FALSYFRNLLYAVAYLHHNGYVHRDIKLSNFLYSP 156


>Z78015-1|CAB01433.1|  206|Caenorhabditis elegans Hypothetical
           protein R02D5.1 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 278 PSISSVVIT-SCAHNSSMTSGTKYSGYC 198
           PSIS++  + S +H+SS +S + Y  YC
Sbjct: 74  PSISTLFDSGSSSHSSSSSSNSSYGSYC 101


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 199  QYPEYFVPDVIDELCAQEVITTELIDGVPLDKL 297
            Q P+     + D++ A +  TT   DG PLDKL
Sbjct: 1501 QVPDEIKKQITDDITAGKSRTTFSQDGFPLDKL 1533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,768,337
Number of Sequences: 27780
Number of extensions: 193382
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)