Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0688
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 142 3e-35
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 45 7e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 38 0.001
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.6
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.7
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 26 4.7
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.2
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 8.3
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 142 bits (345), Expect = 3e-35
Identities = 74/102 (72%), Positives = 84/102 (82%), Gaps = 3/102 (2%)
Frame = +2
Query: 296 DVQFED--NLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDS 466
D QFED +LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+
Sbjct: 66 DCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDT 125
Query: 467 GSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEA 592
GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+A
Sbjct: 126 GSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADA 167
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 45.2 bits (102), Expect = 7e-06
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 377 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 553
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 554 IPTDKTAAIHAEA 592
I T + + +A
Sbjct: 149 IKTTERRRVQLKA 161
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 368 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 544
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117
Query: 545 RGP 553
+GP
Sbjct: 118 KGP 120
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 552 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 418
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 177 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 287
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 428 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 544
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 150 MPLPTRLIAPNIFRNQLLSLENGLRRKINY 61
M L + + P++ NQL L RK+NY
Sbjct: 18 MSLSKKFLKPSVASNQLRLLFTAAERKVNY 47
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 492 PTGIRIGEPESSTGCPRTKPSVPSMAMV 409
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 353 RSPRLVLEVAQHLGENTVRTIAMD 424
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,170
Number of Sequences: 5004
Number of extensions: 49625
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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