Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0688
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 116 MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 214
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 116 MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 214
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 353 RSPRLVLEVAQHLGENTVRTIAMDGTE 433
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 422 DGTEGLVRGQPVLDSGSPI 478
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 457 YGLPTD*AFSTVHGNGPNCVLTQMLGYLKYEAGRSILH 344
           +G P D      +  GPN +   +L Y K E   +I +
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHKDEFDMNITY 684


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 457 YGLPTD*AFSTVHGNGPNCVLTQMLGYLKYEAGRSILH 344
           +G P D      +  GPN +   +L Y K E   +I +
Sbjct: 647 FGFPLDKPLYDFNYEGPNMLFKDILIYHKDEFDMNITY 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,302
Number of Sequences: 438
Number of extensions: 3173
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)